General information for g9024.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytosol aminopeptidase.
Parent gene
- The parent gene g9024 is located on chr_2: 34707510..34708823 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g9024 | g9024.t10 | TTS | g9024.t10 | 34706498 | 34706498 |
| chr_2 | g9024 | g9024.t10 | isoform | g9024.t10 | 34706684 | 34708823 |
| chr_2 | g9024 | g9024.t10 | exon | g9024.t10.exon1 | 34706684 | 34707084 |
| chr_2 | g9024 | g9024.t10 | cds | g9024.t10.CDS1 | 34707042 | 34707084 |
| chr_2 | g9024 | g9024.t10 | exon | g9024.t10.exon2 | 34707298 | 34708022 |
| chr_2 | g9024 | g9024.t10 | cds | g9024.t10.CDS2 | 34707298 | 34708022 |
| chr_2 | g9024 | g9024.t10 | exon | g9024.t10.exon3 | 34708260 | 34708449 |
| chr_2 | g9024 | g9024.t10 | cds | g9024.t10.CDS3 | 34708260 | 34708449 |
| chr_2 | g9024 | g9024.t10 | exon | g9024.t10.exon4 | 34708572 | 34708708 |
| chr_2 | g9024 | g9024.t10 | cds | g9024.t10.CDS4 | 34708572 | 34708708 |
| chr_2 | g9024 | g9024.t10 | exon | g9024.t10.exon5 | 34708812 | 34708823 |
| chr_2 | g9024 | g9024.t10 | cds | g9024.t10.CDS5 | 34708812 | 34708823 |
| chr_2 | g9024 | g9024.t10 | TSS | g9024.t10 | 34708859 | 34708859 |
Sequences
>g9024.t10 Gene=g9024 Length=1465
ATGAGCAATTCGAAAGCCTTAGTGGTTGGTGTATATGTGAAAAGTTCTAAAGGAGAAGAA
AGTAGCGGAAAGAAAGAGATTGAGTTGTCGGCTTGTGCCAAGAAATTAAATGAAAAATCA
AATGGTGAACTTTTAAAGGCGATTAATTCCGCATATTGTGATAAACTATCAGCGGGAAAG
GCGAGATTGTTGTATGGCGTTAAAGATGTTGAAAATTATGGAGCTATTGCTGTTACCGCA
TTAGACTCTTCAAAATGGGATCGATTAGATGGACTTAACACAGAAAATGAATCGGTTCGA
ATTGCTGCATCGAGTGGAGTGAAAGCATTACAGTCTCTTAAAATCAACGACATTTATGTG
GATGATTTGGGATCAGCAAAAGCAGCTGCCGAAGGTAGTATATTGGCAAATTTCAAATTT
CAACCATACAAATCAAAAAAGAGTGAGCTTCCAAATATTCATGCTGTTGAGAAAAATGAT
GAATGGAATAAAGGTGCCATTTTTGCAAATGCTCAAAATTTTTGCAAAACTCTTATGGAT
ACTCCCGCAAATCTTATGACACCAACAATATTTTGTGAAACGGTTAAGGAAAAATTTGCT
GGCCTTGCCAATGTTAATATACAAGTTCATGATACAGAATGGATAAAAAAAGAAAAAATG
GGATTATTCCTGTCAGTAACAAGTGGCTCATCAGAACCACCAAAATTCTTGGAAATCACA
TATACAGGAGATTCATCATCATCACAAGACGTAATTGCACTTGTCGGAAAAGGCATCACA
TTTGACTCAGGCGGTATTAGTCTTAAACCCTCATCAAAAATGGATCAAATGAGAGGTGAT
ATGGGCGGTGCTGCTAATGTAGTTAGCACTATTTGGGCATTGGCATCACTTAAAGTACCG
GTTAATGTAAAAGGTTTTACACCACTTTGTGAAAATATGCCTGGTAATCGTGCCACAAAA
CCAGGTGATGTTATCTTTGGTCGCAACGGAAAAAGTGTTTGTATAGATAACACTGACGCT
GAGGGTCGACTTATATTGGCTGATGCTTTGAGTTATGCTTCTGACGTTTCTGTTTATTTT
TATATAGGCTCGTGTCGCACTTGGTGATTGTGTTACAGCCATTTTTTCAAATTCTGATCC
ATTATGGGAATCAATTCAAGCTGCTGGCTCTGAAACTGGAGATCGTGTTTGGAGAATGCC
ATTATATACACACTATTCCAATCAAATGACAGAACATGATGCATACGATTTGAATAATTT
AGGAAAAGGCAAAGGTGGTGGTTCATGCACAGCAGCTGCATTCCTTCGTGAATTTGTGCC
TAAAAACTTATCATGGCTTCATGCTGACATTGCTGGTGTTATGTGTGAGACATCTGATCA
AAGTTATGTGGGAAATGGTGCTGCTATGACTGGACGTCCTGTTAGAACACTTATTGAATT
TGTTATACGTGAATCAAAAAAATGA
>g9024.t10 Gene=g9024 Length=368
MSNSKALVVGVYVKSSKGEESSGKKEIELSACAKKLNEKSNGELLKAINSAYCDKLSAGK
ARLLYGVKDVENYGAIAVTALDSSKWDRLDGLNTENESVRIAASSGVKALQSLKINDIYV
DDLGSAKAAAEGSILANFKFQPYKSKKSELPNIHAVEKNDEWNKGAIFANAQNFCKTLMD
TPANLMTPTIFCETVKEKFAGLANVNIQVHDTEWIKKEKMGLFLSVTSGSSEPPKFLEIT
YTGDSSSSQDVIALVGKGITFDSGGISLKPSSKMDQMRGDMGGAANVVSTIWALASLKVP
VNVKGFTPLCENMPGNRATKPGDVIFGRNGKSVCIDNTDAEGRLILADALSYASDVSVYF
YIGSCRTW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g9024.t10 | CDD | cd00433 | Peptidase_M17 | 4 | 355 | 6.10618E-120 |
| 13 | g9024.t10 | Gene3D | G3DSA:3.40.220.10 | Leucine Aminopeptidase | 4 | 170 | 5.4E-37 |
| 12 | g9024.t10 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 171 | 362 | 3.4E-77 |
| 3 | g9024.t10 | PANTHER | PTHR11963 | LEUCINE AMINOPEPTIDASE-RELATED | 7 | 355 | 2.6E-106 |
| 4 | g9024.t10 | PANTHER | PTHR11963:SF40 | CYTOSOL AMINOPEPTIDASE | 7 | 355 | 2.6E-106 |
| 8 | g9024.t10 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 252 | 269 | 9.6E-39 |
| 5 | g9024.t10 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 274 | 295 | 9.6E-39 |
| 6 | g9024.t10 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 311 | 332 | 9.6E-39 |
| 7 | g9024.t10 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 333 | 353 | 9.6E-39 |
| 1 | g9024.t10 | Pfam | PF02789 | Cytosol aminopeptidase family, N-terminal domain | 8 | 147 | 1.8E-10 |
| 2 | g9024.t10 | Pfam | PF00883 | Cytosol aminopeptidase family, catalytic domain | 173 | 354 | 7.8E-73 |
| 11 | g9024.t10 | ProSitePatterns | PS00631 | Cytosol aminopeptidase signature. | 337 | 344 | - |
| 9 | g9024.t10 | SUPERFAMILY | SSF52949 | Macro domain-like | 5 | 164 | 1.29E-20 |
| 10 | g9024.t10 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 168 | 357 | 5.34E-69 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0019538 | protein metabolic process | BP |
| GO:0005737 | cytoplasm | CC |
| GO:0070006 | metalloaminopeptidase activity | MF |
| GO:0030145 | manganese ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
