Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytosol aminopeptidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g9024 g9024.t11 TTS g9024.t11 34706498 34706498
chr_2 g9024 g9024.t11 isoform g9024.t11 34707175 34708246
chr_2 g9024 g9024.t11 exon g9024.t11.exon1 34707175 34708246
chr_2 g9024 g9024.t11 cds g9024.t11.CDS1 34707294 34707827
chr_2 g9024 g9024.t11 TSS g9024.t11 34708859 34708859

Sequences

>g9024.t11 Gene=g9024 Length=1072
GGTCATTTCATAATTTTTTTTTCTTCCTCATATACACACACATTTAGACTAGCGACAAAC
ATTAACAACAACAACAACAGTGAAGGAGAAAGAAATTTCTCTTTCGTGCTCACAATGTAT
TCGTTATTTACTTTATTCACATTTGCTTTCCTTCCTTTGTCTTTCATATCTTTCTTGTCT
TTTTGTCTCGATTATCATTGCTTTATTTTTTTTACTATTTTAAGAAAATCAACGACATTT
ATGTGGATGATTTGGGATCAGCAAAAGCAGCTGCCGAAGGTAGTATATTGGCAAATTTCA
AATTTCAACCATACAAATCAAAAAAGAGTGAGCTTCCAAATATTCATGCTGTTGAGAAAA
ATGATGAATGGAATAAAGGTGCCATTTTTGCAAATGCTCAAAATTTTTGCAAAACTCTTA
TGGATACTCCCGCAAATCTTATGACACCAACAATATTTTGTGAAACGGTTAAGGAAAAAT
TTGCTGGCCTTGCCAATGTTAATATACAAGTTCATGATACAGAATGGATAAAAAAAGAAA
AAATGGGATTATTCCTGTCAGTAACAAGTGGCTCATCAGAACCACCAAAATTCTTGGAAA
TCACATATACAGGAGATTCATCATCATCACAAGACGTAATTGCACTTGTCGGAAAAGGCA
TCACATTTGACTCAGGCGGTATTAGTCTTAAACCCTCATCAAAAATGGATCAAATGAGAG
GTGATATGGGCGGTGCTGCTAATGTAGTTAGCACTATTTGGGCATTGGCATCACTTAAAG
TACCGGTTAATGTAAAAGGTTTTACACCACTTTGTGAAAATATGCCTGGTAATCGTGCCA
CAAAACCAGGTGATGTTATCTTTGGTCGCAACGGAAAAAGTGTTTGTATAGATAACACTG
ACGCTGAGGGTCGACTTATATTGGCTGATGCTTTGAGTTATGCTTCTGAGTAAGAAAATA
CAAAGAAAATGCACTTACAATGTTTTAATCAATCAACCTTTCCATTTATTTAGCTTCAAG
CCACGCTTTATCTTAGATATTGCAACATTAACTGGAGCGGTAAGTCAATAAT

>g9024.t11 Gene=g9024 Length=177
MDTPANLMTPTIFCETVKEKFAGLANVNIQVHDTEWIKKEKMGLFLSVTSGSSEPPKFLE
ITYTGDSSSSQDVIALVGKGITFDSGGISLKPSSKMDQMRGDMGGAANVVSTIWALASLK
VPVNVKGFTPLCENMPGNRATKPGDVIFGRNGKSVCIDNTDAEGRLILADALSYASE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g9024.t11 Gene3D G3DSA:3.40.630.10 Zn peptidases 1 177 1.9E-75
2 g9024.t11 PANTHER PTHR11963 LEUCINE AMINOPEPTIDASE-RELATED 1 177 1.7E-78
3 g9024.t11 PANTHER PTHR11963:SF40 CYTOSOL AMINOPEPTIDASE 1 177 1.7E-78
6 g9024.t11 PRINTS PR00481 Cytosol aminopeptidase signature 74 91 9.7E-40
7 g9024.t11 PRINTS PR00481 Cytosol aminopeptidase signature 96 117 9.7E-40
4 g9024.t11 PRINTS PR00481 Cytosol aminopeptidase signature 133 154 9.7E-40
5 g9024.t11 PRINTS PR00481 Cytosol aminopeptidase signature 155 175 9.7E-40
1 g9024.t11 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 1 176 2.0E-71
9 g9024.t11 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 159 166 -
8 g9024.t11 SUPERFAMILY SSF53187 Zn-dependent exopeptidases 2 177 6.28E-66

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006508 proteolysis BP
GO:0019538 protein metabolic process BP
GO:0005737 cytoplasm CC
GO:0070006 metalloaminopeptidase activity MF
GO:0030145 manganese ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values