Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytosol aminopeptidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g9024 g9024.t12 TTS g9024.t12 34706498 34706498
chr_2 g9024 g9024.t12 isoform g9024.t12 34707302 34708823
chr_2 g9024 g9024.t12 exon g9024.t12.exon1 34707302 34708022
chr_2 g9024 g9024.t12 cds g9024.t12.CDS1 34707303 34708022
chr_2 g9024 g9024.t12 exon g9024.t12.exon2 34708260 34708449
chr_2 g9024 g9024.t12 cds g9024.t12.CDS2 34708260 34708449
chr_2 g9024 g9024.t12 exon g9024.t12.exon3 34708572 34708708
chr_2 g9024 g9024.t12 cds g9024.t12.CDS3 34708572 34708708
chr_2 g9024 g9024.t12 exon g9024.t12.exon4 34708812 34708823
chr_2 g9024 g9024.t12 cds g9024.t12.CDS4 34708812 34708823
chr_2 g9024 g9024.t12 TSS g9024.t12 34708859 34708859

Sequences

>g9024.t12 Gene=g9024 Length=1060
ATGAGCAATTCGAAAGCCTTAGTGGTTGGTGTATATGTGAAAAGTTCTAAAGGAGAAGAA
AGTAGCGGAAAGAAAGAGATTGAGTTGTCGGCTTGTGCCAAGAAATTAAATGAAAAATCA
AATGGTGAACTTTTAAAGGCGATTAATTCCGCATATTGTGATAAACTATCAGCGGGAAAG
GCGAGATTGTTGTATGGCGTTAAAGATGTTGAAAATTATGGAGCTATTGCTGTTACCGCA
TTAGACTCTTCAAAATGGGATCGATTAGATGGACTTAACACAGAAAATGAATCGGTTCGA
ATTGCTGCATCGAGTGGAGTGAAAGCATTACAGTCTCTTAAAATCAACGACATTTATGTG
GATGATTTGGGATCAGCAAAAGCAGCTGCCGAAGGTAGTATATTGGCAAATTTCAAATTT
CAACCATACAAATCAAAAAAGAGTGAGCTTCCAAATATTCATGCTGTTGAGAAAAATGAT
GAATGGAATAAAGGTGCCATTTTTGCAAATGCTCAAAATTTTTGCAAAACTCTTATGGAT
ACTCCCGCAAATCTTATGACACCAACAATATTTTGTGAAACGGTTAAGGAAAAATTTGCT
GGCCTTGCCAATGTTAATATACAAGTTCATGATACAGAATGGATAAAAAAAGAAAAAATG
GGATTATTCCTGTCAGTAACAAGTGGCTCATCAGAACCACCAAAATTCTTGGAAATCACA
TATACAGGAGATTCATCATCATCACAAGACGTAATTGCACTTGTCGGAAAAGGCATCACA
TTTGACTCAGGCGGTATTAGTCTTAAACCCTCATCAAAAATGGATCAAATGAGAGGTGAT
ATGGGCGGTGCTGCTAATGTAGTTAGCACTATTTGGGCATTGGCATCACTTAAAGTACCG
GTTAATGTAAAAGGTTTTACACCACTTTGTGAAAATATGCCTGGTAATCGTGCCACAAAA
CCAGGTGATGTTATCTTTGGTCGCAACGGAAAAAGTGTTTGTATAGATAACACTGACGCT
GAGGGTCGACTTATATTGGCTGATGCTTTGAGTTATGCTT

>g9024.t12 Gene=g9024 Length=353
MSNSKALVVGVYVKSSKGEESSGKKEIELSACAKKLNEKSNGELLKAINSAYCDKLSAGK
ARLLYGVKDVENYGAIAVTALDSSKWDRLDGLNTENESVRIAASSGVKALQSLKINDIYV
DDLGSAKAAAEGSILANFKFQPYKSKKSELPNIHAVEKNDEWNKGAIFANAQNFCKTLMD
TPANLMTPTIFCETVKEKFAGLANVNIQVHDTEWIKKEKMGLFLSVTSGSSEPPKFLEIT
YTGDSSSSQDVIALVGKGITFDSGGISLKPSSKMDQMRGDMGGAANVVSTIWALASLKVP
VNVKGFTPLCENMPGNRATKPGDVIFGRNGKSVCIDNTDAEGRLILADALSYA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g9024.t12 CDD cd00433 Peptidase_M17 4 353 5.30658E-119
13 g9024.t12 Gene3D G3DSA:3.40.220.10 Leucine Aminopeptidase 4 170 4.9E-37
12 g9024.t12 Gene3D G3DSA:3.40.630.10 Zn peptidases 171 353 1.7E-76
3 g9024.t12 PANTHER PTHR11963 LEUCINE AMINOPEPTIDASE-RELATED 7 353 1.7E-105
4 g9024.t12 PANTHER PTHR11963:SF40 CYTOSOL AMINOPEPTIDASE 7 353 1.7E-105
8 g9024.t12 PRINTS PR00481 Cytosol aminopeptidase signature 252 269 8.3E-39
5 g9024.t12 PRINTS PR00481 Cytosol aminopeptidase signature 274 295 8.3E-39
6 g9024.t12 PRINTS PR00481 Cytosol aminopeptidase signature 311 332 8.3E-39
7 g9024.t12 PRINTS PR00481 Cytosol aminopeptidase signature 333 353 8.3E-39
1 g9024.t12 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 8 147 1.6E-10
2 g9024.t12 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 173 353 3.6E-72
11 g9024.t12 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 337 344 -
9 g9024.t12 SUPERFAMILY SSF52949 Macro domain-like 5 164 1.18E-20
10 g9024.t12 SUPERFAMILY SSF53187 Zn-dependent exopeptidases 168 353 4.71E-68

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006508 proteolysis BP
GO:0019538 protein metabolic process BP
GO:0005737 cytoplasm CC
GO:0070006 metalloaminopeptidase activity MF
GO:0030145 manganese ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values