Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytosol aminopeptidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g9024 g9024.t13 TTS g9024.t13 34706498 34706498
chr_2 g9024 g9024.t13 isoform g9024.t13 34707305 34708823
chr_2 g9024 g9024.t13 exon g9024.t13.exon1 34707305 34708022
chr_2 g9024 g9024.t13 cds g9024.t13.CDS1 34707306 34707827
chr_2 g9024 g9024.t13 exon g9024.t13.exon2 34708260 34708823
chr_2 g9024 g9024.t13 TSS g9024.t13 34708859 34708859

Sequences

>g9024.t13 Gene=g9024 Length=1282
ATGAGCAATTCGGTAAGGAAAATTTTCACTTTGATAAAAATTTATTTCACCGATTTGTTC
TTCGTTACTCGCGGTTTTTTTACACAATATTTTGTTCTCGTGTTCTTATTTCTAGAAAGC
CTTAGTGGTTGGTGTATATGTGAAAAGTTCTAAAGGAGAAGAAAGTAGCGGAAAGAAAGA
GATTGAGTTGTCGGCTTGTGCCAAGAAATTAAATGAAAAATCAAATGGTGAACTTTTAAA
GGCGATTAATTCGTAAGTTTATTTTTTCTTATTATTCTATTCATCTTATTCTTTTCTCTT
TTGTTTATATTCTTGTGTTAATTATTTATTATCATGTAAACATGTTTCTTTATTGCATAT
ATATTAAATTACAGCGCATATTGTGATAAACTATCAGCGGGAAAGGCGAGATTGTTGTAT
GGCGTTAAAGATGTTGAAAATTATGGAGCTATTGCTGTTACCGCATTAGACTCTTCAAAA
TGGGATCGATTAGATGGACTTAACACAGAAAATGAATCGGTTCGAATTGCTGCATCGAGT
GGAGTGAAAGCATTACAGTCTCTTAAAATCAACGACATTTATGTGGATGATTTGGGATCA
GCAAAAGCAGCTGCCGAAGGTAGTATATTGGCAAATTTCAAATTTCAACCATACAAATCA
AAAAAGAGTGAGCTTCCAAATATTCATGCTGTTGAGAAAAATGATGAATGGAATAAAGGT
GCCATTTTTGCAAATGCTCAAAATTTTTGCAAAACTCTTATGGATACTCCCGCAAATCTT
ATGACACCAACAATATTTTGTGAAACGGTTAAGGAAAAATTTGCTGGCCTTGCCAATGTT
AATATACAAGTTCATGATACAGAATGGATAAAAAAAGAAAAAATGGGATTATTCCTGTCA
GTAACAAGTGGCTCATCAGAACCACCAAAATTCTTGGAAATCACATATACAGGAGATTCA
TCATCATCACAAGACGTAATTGCACTTGTCGGAAAAGGCATCACATTTGACTCAGGCGGT
ATTAGTCTTAAACCCTCATCAAAAATGGATCAAATGAGAGGTGATATGGGCGGTGCTGCT
AATGTAGTTAGCACTATTTGGGCATTGGCATCACTTAAAGTACCGGTTAATGTAAAAGGT
TTTACACCACTTTGTGAAAATATGCCTGGTAATCGTGCCACAAAACCAGGTGATGTTATC
TTTGGTCGCAACGGAAAAAGTGTTTGTATAGATAACACTGACGCTGAGGGTCGACTTATA
TTGGCTGATGCTTTGAGTTATG

>g9024.t13 Gene=g9024 Length=174
MDTPANLMTPTIFCETVKEKFAGLANVNIQVHDTEWIKKEKMGLFLSVTSGSSEPPKFLE
ITYTGDSSSSQDVIALVGKGITFDSGGISLKPSSKMDQMRGDMGGAANVVSTIWALASLK
VPVNVKGFTPLCENMPGNRATKPGDVIFGRNGKSVCIDNTDAEGRLILADALSY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g9024.t13 Gene3D G3DSA:3.40.630.10 Zn peptidases 1 174 3.9E-74
2 g9024.t13 PANTHER PTHR11963 LEUCINE AMINOPEPTIDASE-RELATED 1 174 4.4E-77
3 g9024.t13 PANTHER PTHR11963:SF40 CYTOSOL AMINOPEPTIDASE 1 174 4.4E-77
5 g9024.t13 PRINTS PR00481 Cytosol aminopeptidase signature 74 91 3.4E-39
7 g9024.t13 PRINTS PR00481 Cytosol aminopeptidase signature 96 117 3.4E-39
4 g9024.t13 PRINTS PR00481 Cytosol aminopeptidase signature 133 154 3.4E-39
6 g9024.t13 PRINTS PR00481 Cytosol aminopeptidase signature 155 174 3.4E-39
1 g9024.t13 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 1 174 3.1E-70
9 g9024.t13 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 159 166 -
8 g9024.t13 SUPERFAMILY SSF53187 Zn-dependent exopeptidases 2 174 7.22E-65

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006508 proteolysis BP
GO:0019538 protein metabolic process BP
GO:0005737 cytoplasm CC
GO:0070006 metalloaminopeptidase activity MF
GO:0030145 manganese ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values