General information for g9024.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cytosol aminopeptidase.
Parent gene
- The parent gene g9024 is located on chr_2: 34707510..34708823 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g9024 | g9024.t15 | isoform | g9024.t15 | 34707510 | 34708823 |
| chr_2 | g9024 | g9024.t15 | exon | g9024.t15.exon1 | 34707510 | 34708022 |
| chr_2 | g9024 | g9024.t15 | cds | g9024.t15.CDS1 | 34707510 | 34707827 |
| chr_2 | g9024 | g9024.t15 | TTS | g9024.t15 | 34707718 | 34707718 |
| chr_2 | g9024 | g9024.t15 | exon | g9024.t15.exon2 | 34708260 | 34708449 |
| chr_2 | g9024 | g9024.t15 | exon | g9024.t15.exon3 | 34708572 | 34708823 |
| chr_2 | g9024 | g9024.t15 | TSS | g9024.t15 | 34708859 | 34708859 |
Sequences
>g9024.t15 Gene=g9024 Length=955
ATGAGCAATTCGGTAAGGAAAATTTTCACTTTGATAAAAATTTATTTCACCGATTTGTTC
TTCGTTACTCGCGGTTTTTTTACACAATATTTTGTTCTCGTGTTCTTATTTCTAGAAAGC
CTTAGTGGTTGGTGTATATGTGAAAAGTTCTAAAGGAGAAGAAAGTAGCGGAAAGAAAGA
GATTGAGTTGTCGGCTTGTGCCAAGAAATTAAATGAAAAATCAAATGGTGAACTTTTAAA
GGCGATTAATTCCGCATATTGTGATAAACTATCAGCGGGAAAGGCGAGATTGTTGTATGG
CGTTAAAGATGTTGAAAATTATGGAGCTATTGCTGTTACCGCATTAGACTCTTCAAAATG
GGATCGATTAGATGGACTTAACACAGAAAATGAATCGGTTCGAATTGCTGCATCGAGTGG
AGTGAAAGCATTACAGTCTCTTAAAATCAACGACATTTATGTGGATGATTTGGGATCAGC
AAAAGCAGCTGCCGAAGGTAGTATATTGGCAAATTTCAAATTTCAACCATACAAATCAAA
AAAGAGTGAGCTTCCAAATATTCATGCTGTTGAGAAAAATGATGAATGGAATAAAGGTGC
CATTTTTGCAAATGCTCAAAATTTTTGCAAAACTCTTATGGATACTCCCGCAAATCTTAT
GACACCAACAATATTTTGTGAAACGGTTAAGGAAAAATTTGCTGGCCTTGCCAATGTTAA
TATACAAGTTCATGATACAGAATGGATAAAAAAAGAAAAAATGGGATTATTCCTGTCAGT
AACAAGTGGCTCATCAGAACCACCAAAATTCTTGGAAATCACATATACAGGAGATTCATC
ATCATCACAAGACGTAATTGCACTTGTCGGAAAAGGCATCACATTTGACTCAGGCGGTAT
TAGTCTTAAACCCTCATCAAAAATGGATCAAATGAGAGGTGATATGGGCGGTGCT
>g9024.t15 Gene=g9024 Length=106
MDTPANLMTPTIFCETVKEKFAGLANVNIQVHDTEWIKKEKMGLFLSVTSGSSEPPKFLE
ITYTGDSSSSQDVIALVGKGITFDSGGISLKPSSKMDQMRGDMGGA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9024.t15 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 1 | 106 | 0 |
| 2 | g9024.t15 | PANTHER | PTHR11963 | LEUCINE AMINOPEPTIDASE-RELATED | 1 | 106 | 0 |
| 3 | g9024.t15 | PANTHER | PTHR11963:SF40 | CYTOSOL AMINOPEPTIDASE | 1 | 106 | 0 |
| 4 | g9024.t15 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 74 | 91 | 0 |
| 5 | g9024.t15 | PRINTS | PR00481 | Cytosol aminopeptidase signature | 96 | 106 | 0 |
| 1 | g9024.t15 | Pfam | PF00883 | Cytosol aminopeptidase family, catalytic domain | 1 | 106 | 0 |
| 6 | g9024.t15 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 2 | 106 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0019538 | protein metabolic process | BP |
| GO:0005737 | cytoplasm | CC |
| GO:0070006 | metalloaminopeptidase activity | MF |
| GO:0030145 | manganese ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
