General information for g9024.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9024 is located on chr_2: 34707510..34708823 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g9024 | g9024.t6 | isoform | g9024.t6 | 34706327 | 34707054 |
| chr_2 | g9024 | g9024.t6 | exon | g9024.t6.exon1 | 34706327 | 34707054 |
| chr_2 | g9024 | g9024.t6 | TTS | g9024.t6 | 34706498 | 34706498 |
| chr_2 | g9024 | g9024.t6 | cds | g9024.t6.CDS1 | 34706684 | 34706953 |
| chr_2 | g9024 | g9024.t6 | TSS | g9024.t6 | NA | NA |
Sequences
>g9024.t6 Gene=g9024 Length=728
TCGCACTTGGTGATTGTGTTACAGCCATTTTTTCAAATTCTGATCCATTATGGGAATCAA
TTCAAGCTGCTGGCTCTGAAACTGGAGATCGTGTTTGGAGAATGCCATTATATACACACT
ATTCCAATCAAATGACAGAACATGATGCATACGATTTGAATAATTTAGGAAAAGGCAAAG
GTGGTGGTTCATGCACAGCAGCTGCATTCCTTCGTGAATTTGTGCCTAAAAACTTATCAT
GGCTTCATGCTGACATTGCTGGTGTTATGTGTGAGACATCTGATCAAAGTTATGTGGGAA
ATGGTGCTGCTATGACTGGACGTCCTGTTAGAACACTTATTGAATTTGTTATACGTGAAT
CAAAAAAATGAAAAATCTTTTAAAGTGTCGTAAAATTTTTGTAATAATGTCGGAAATATT
TTAAAGTCCAAAGATGTCCTTTGTCATTCTTTTTTTTCATTTATGAAACGTACATACACA
AATACAATTTGTCTTGTTTTTAAAACATTGTTGATTGAGCAATAAAGCAGTAAAGTTCTT
TTTTTGTAACATGATTTAAAAAACATTGTCTTTTTATATGGATTTTGTGAAACTGAAAGT
TTCTCATTTTTATTCTTCTTTTTTTTAACTTTGCAGATTTCTTACCATTTTTATCAAACA
CAAATTTGCATTACACTCGTATTTTTTTAGTTTAAGCATTAAAATGATTATTAAGTGCAA
ACTAATAA
>g9024.t6 Gene=g9024 Length=89
MPLYTHYSNQMTEHDAYDLNNLGKGKGGGSCTAAAFLREFVPKNLSWLHADIAGVMCETS
DQSYVGNGAAMTGRPVRTLIEFVIRESKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9024.t6 | Gene3D | G3DSA:3.40.630.10 | Zn peptidases | 1 | 86 | 0 |
| 2 | g9024.t6 | PANTHER | PTHR11963 | LEUCINE AMINOPEPTIDASE-RELATED | 1 | 86 | 0 |
| 3 | g9024.t6 | PANTHER | PTHR11963:SF40 | CYTOSOL AMINOPEPTIDASE | 1 | 86 | 0 |
| 1 | g9024.t6 | Pfam | PF00883 | Cytosol aminopeptidase family, catalytic domain | 1 | 80 | 0 |
| 4 | g9024.t6 | SUPERFAMILY | SSF53187 | Zn-dependent exopeptidases | 1 | 84 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0019538 | protein metabolic process | BP |
| GO:0005737 | cytoplasm | CC |
| GO:0070006 | metalloaminopeptidase activity | MF |
| GO:0030145 | manganese ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
