Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytosol aminopeptidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g9024 g9024.t9 TTS g9024.t9 34706498 34706498
chr_2 g9024 g9024.t9 isoform g9024.t9 34706684 34708823
chr_2 g9024 g9024.t9 exon g9024.t9.exon1 34706684 34707061
chr_2 g9024 g9024.t9 cds g9024.t9.CDS1 34706684 34707061
chr_2 g9024 g9024.t9 exon g9024.t9.exon2 34707188 34707233
chr_2 g9024 g9024.t9 cds g9024.t9.CDS2 34707188 34707233
chr_2 g9024 g9024.t9 exon g9024.t9.exon3 34707298 34708022
chr_2 g9024 g9024.t9 cds g9024.t9.CDS3 34707298 34707827
chr_2 g9024 g9024.t9 exon g9024.t9.exon4 34708260 34708449
chr_2 g9024 g9024.t9 exon g9024.t9.exon5 34708572 34708823
chr_2 g9024 g9024.t9 TSS g9024.t9 34708859 34708859

Sequences

>g9024.t9 Gene=g9024 Length=1591
ATGAGCAATTCGGTAAGGAAAATTTTCACTTTGATAAAAATTTATTTCACCGATTTGTTC
TTCGTTACTCGCGGTTTTTTTACACAATATTTTGTTCTCGTGTTCTTATTTCTAGAAAGC
CTTAGTGGTTGGTGTATATGTGAAAAGTTCTAAAGGAGAAGAAAGTAGCGGAAAGAAAGA
GATTGAGTTGTCGGCTTGTGCCAAGAAATTAAATGAAAAATCAAATGGTGAACTTTTAAA
GGCGATTAATTCCGCATATTGTGATAAACTATCAGCGGGAAAGGCGAGATTGTTGTATGG
CGTTAAAGATGTTGAAAATTATGGAGCTATTGCTGTTACCGCATTAGACTCTTCAAAATG
GGATCGATTAGATGGACTTAACACAGAAAATGAATCGGTTCGAATTGCTGCATCGAGTGG
AGTGAAAGCATTACAGTCTCTTAAAATCAACGACATTTATGTGGATGATTTGGGATCAGC
AAAAGCAGCTGCCGAAGGTAGTATATTGGCAAATTTCAAATTTCAACCATACAAATCAAA
AAAGAGTGAGCTTCCAAATATTCATGCTGTTGAGAAAAATGATGAATGGAATAAAGGTGC
CATTTTTGCAAATGCTCAAAATTTTTGCAAAACTCTTATGGATACTCCCGCAAATCTTAT
GACACCAACAATATTTTGTGAAACGGTTAAGGAAAAATTTGCTGGCCTTGCCAATGTTAA
TATACAAGTTCATGATACAGAATGGATAAAAAAAGAAAAAATGGGATTATTCCTGTCAGT
AACAAGTGGCTCATCAGAACCACCAAAATTCTTGGAAATCACATATACAGGAGATTCATC
ATCATCACAAGACGTAATTGCACTTGTCGGAAAAGGCATCACATTTGACTCAGGCGGTAT
TAGTCTTAAACCCTCATCAAAAATGGATCAAATGAGAGGTGATATGGGCGGTGCTGCTAA
TGTAGTTAGCACTATTTGGGCATTGGCATCACTTAAAGTACCGGTTAATGTAAAAGGTTT
TACACCACTTTGTGAAAATATGCCTGGTAATCGTGCCACAAAACCAGGTGATGTTATCTT
TGGTCGCAACGGAAAAAGTGTTTGTATAGATAACACTGACGCTGAGGGTCGACTTATATT
GGCTGATGCTTTGAGTTATGCTTCTGACTTCAAGCCACGCTTTATCTTAGATATTGCAAC
ATTAACTGGAGCGGCTCGTGTCGCACTTGGTGATTGTGTTACAGCCATTTTTTCAAATTC
TGATCCATTATGGGAATCAATTCAAGCTGCTGGCTCTGAAACTGGAGATCGTGTTTGGAG
AATGCCATTATATACACACTATTCCAATCAAATGACAGAACATGATGCATACGATTTGAA
TAATTTAGGAAAAGGCAAAGGTGGTGGTTCATGCACAGCAGCTGCATTCCTTCGTGAATT
TGTGCCTAAAAACTTATCATGGCTTCATGCTGACATTGCTGGTGTTATGTGTGAGACATC
TGATCAAAGTTATGTGGGAAATGGTGCTGCTATGACTGGACGTCCTGTTAGAACACTTAT
TGAATTTGTTATACGTGAATCAAAAAAATGA

>g9024.t9 Gene=g9024 Length=317
MDTPANLMTPTIFCETVKEKFAGLANVNIQVHDTEWIKKEKMGLFLSVTSGSSEPPKFLE
ITYTGDSSSSQDVIALVGKGITFDSGGISLKPSSKMDQMRGDMGGAANVVSTIWALASLK
VPVNVKGFTPLCENMPGNRATKPGDVIFGRNGKSVCIDNTDAEGRLILADALSYASDFKP
RFILDIATLTGAARVALGDCVTAIFSNSDPLWESIQAAGSETGDRVWRMPLYTHYSNQMT
EHDAYDLNNLGKGKGGGSCTAAAFLREFVPKNLSWLHADIAGVMCETSDQSYVGNGAAMT
GRPVRTLIEFVIRESKK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g9024.t9 CDD cd00433 Peptidase_M17 1 311 4.59478E-157
11 g9024.t9 Gene3D G3DSA:3.40.630.10 Zn peptidases 1 314 2.1E-127
2 g9024.t9 PANTHER PTHR11963 LEUCINE AMINOPEPTIDASE-RELATED 1 314 3.9E-137
3 g9024.t9 PANTHER PTHR11963:SF40 CYTOSOL AMINOPEPTIDASE 1 314 3.9E-137
7 g9024.t9 PRINTS PR00481 Cytosol aminopeptidase signature 74 91 8.4E-49
8 g9024.t9 PRINTS PR00481 Cytosol aminopeptidase signature 96 117 8.4E-49
4 g9024.t9 PRINTS PR00481 Cytosol aminopeptidase signature 133 154 8.4E-49
6 g9024.t9 PRINTS PR00481 Cytosol aminopeptidase signature 155 175 8.4E-49
5 g9024.t9 PRINTS PR00481 Cytosol aminopeptidase signature 183 198 8.4E-49
1 g9024.t9 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 1 308 4.9E-117
10 g9024.t9 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 159 166 -
9 g9024.t9 SUPERFAMILY SSF53187 Zn-dependent exopeptidases 2 312 2.92E-111

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006508 proteolysis BP
GO:0019538 protein metabolic process BP
GO:0005737 cytoplasm CC
GO:0070006 metalloaminopeptidase activity MF
GO:0030145 manganese ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values