Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g903 g903.t2 isoform g903.t2 6777468 6778954
chr_3 g903 g903.t2 exon g903.t2.exon1 6777468 6777563
chr_3 g903 g903.t2 TSS g903.t2 6777473 6777473
chr_3 g903 g903.t2 exon g903.t2.exon2 6777995 6778954
chr_3 g903 g903.t2 cds g903.t2.CDS1 6778010 6778954
chr_3 g903 g903.t2 TTS g903.t2 NA NA

Sequences

>g903.t2 Gene=g903 Length=1056
ATGTTCATTCTTGTAAGAGACACTGAAAGTATCGGAGCAATAATTAAGTTAAATTTTTAA
AAATTGAATTTGTATTTAATATTTCATTTTGGGAAGATCAACTTATCAAAAATGAAACCA
AAACTCCACTGTAAATTATACTTAGCTTATGACAATTACACAGCTGATTTTGGATTCCAA
ACGATTGAAAAGAAAATTGAAAATTCCTATCAACTGACTTGGAAACATCTCCCTGGTAAA
AATAACAATCATGTTACTTGTGTAAAATTCAAAAACTGCAATCTTTGGAATTTTCCTGAA
GACATTAACATCATTTTTCCAAATATGAAAATTATGCACATTGAAAATTCAAAAATTCAT
TCAGTTGAACGTTTACAGCAAAAAATGTCATTGGAAAAATTGATTTTAAGAAGAAATGAA
ATCCCATTTTTGCCTGGTGATTTTTTTTCAAATATGCCTCATTTAAATAATTTCAAAATG
TCTGAAAATCGAATTCAATTTGTTGAGCCAAATATTTTTGATAATGCTGAAAACTTGTCG
CTTGTTCAATACAATAATGAGCAATTCATCAAAAATGGCTATGAATTTAAATCTTGGGAA
CCAATAAAGAAAGCATTGCTTGAAGATTGCTCAAAATCACCATGGAAGAGATACTACGAT
GAGAAGAAAATTCTGGAAGCTGAAAATCAAAAACTTATCCAAGAAAAATCGACATTAATG
AAATTGCAAAATGTACTAAAAGATGAAGATTTGAAAGATTTCACAATTATTATTGGAAGT
CAACAATTTAAAGTTCATAAACTAGTCTTAGTTGCAAACAGTTCTTTTTTTGCTAAAAAG
ATTAAATCAAATCCAGATAATGGCAAAATGTATCTTATGGATCTTTTCGACATTAATCCT
GAAATTTTTCAAATAATTCTTGATTATTTTTACACACAAGAATTCCCAAAAGCTATGAAT
ATCGATTATCAACAGTTGATGATGGCAAGTACAAGATTAAAGGTTAAATTATTGGCGAAA
TTTGCTTGTGACAAACTTGTTGAAAAAATCCACTAA

>g903.t2 Gene=g903 Length=314
MKPKLHCKLYLAYDNYTADFGFQTIEKKIENSYQLTWKHLPGKNNNHVTCVKFKNCNLWN
FPEDINIIFPNMKIMHIENSKIHSVERLQQKMSLEKLILRRNEIPFLPGDFFSNMPHLNN
FKMSENRIQFVEPNIFDNAENLSLVQYNNEQFIKNGYEFKSWEPIKKALLEDCSKSPWKR
YYDEKKILEAENQKLIQEKSTLMKLQNVLKDEDLKDFTIIIGSQQFKVHKLVLVANSSFF
AKKIKSNPDNGKMYLMDLFDINPEIFQIILDYFYTQEFPKAMNIDYQQLMMASTRLKVKL
LAKFACDKLVEKIH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g903.t2 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 216 296 1.61044E-18
9 g903.t2 Coils Coil Coil 185 208 -
7 g903.t2 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 9 168 9.0E-14
8 g903.t2 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 184 314 3.5E-21
3 g903.t2 PANTHER PTHR24413:SF213 FI01029P-RELATED 110 308 8.0E-15
4 g903.t2 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 110 308 8.0E-15
1 g903.t2 Pfam PF13855 Leucine rich repeat 93 143 7.8E-9
2 g903.t2 Pfam PF00651 BTB/POZ domain 206 311 2.1E-16
12 g903.t2 ProSiteProfiles PS50097 BTB domain profile. 215 282 15.908
11 g903.t2 SMART SM00225 BTB_4 215 313 1.4E-18
5 g903.t2 SUPERFAMILY SSF52058 L domain-like 44 154 2.24E-12
6 g903.t2 SUPERFAMILY SSF54695 POZ domain 201 311 2.16E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values