General information for g9032.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transient receptor potential cation channel subfamily A member 1.
Parent gene
- The parent gene g9032 is located on chr_2: 34749129..34758731 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g9032 | g9032.t1 | isoform | g9032.t1 | 34749129 | 34758731 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon1 | 34749129 | 34749296 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS1 | 34749129 | 34749296 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon2 | 34749745 | 34749878 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS2 | 34749745 | 34749878 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon3 | 34749933 | 34750008 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS3 | 34749933 | 34750008 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon4 | 34750065 | 34750154 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS4 | 34750065 | 34750154 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon5 | 34750227 | 34750339 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS5 | 34750227 | 34750339 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon6 | 34750404 | 34751046 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS6 | 34750404 | 34751046 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon7 | 34751105 | 34751284 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS7 | 34751105 | 34751284 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon8 | 34751909 | 34752019 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS8 | 34751909 | 34752019 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon9 | 34752105 | 34752419 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS9 | 34752105 | 34752419 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon10 | 34752573 | 34752659 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS10 | 34752573 | 34752659 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon11 | 34752751 | 34752769 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS11 | 34752751 | 34752769 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon12 | 34752858 | 34752950 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS12 | 34752858 | 34752950 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon13 | 34753020 | 34753410 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS13 | 34753020 | 34753410 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon14 | 34753468 | 34753598 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS14 | 34753468 | 34753598 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon15 | 34753652 | 34753744 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS15 | 34753652 | 34753744 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon16 | 34753799 | 34753889 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS16 | 34753799 | 34753889 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon17 | 34753958 | 34754048 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS17 | 34753958 | 34754048 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon18 | 34754582 | 34754646 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS18 | 34754582 | 34754646 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon19 | 34754751 | 34754793 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS19 | 34754751 | 34754793 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon20 | 34754875 | 34754913 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS20 | 34754875 | 34754913 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon21 | 34754973 | 34755129 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS21 | 34754973 | 34755129 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon22 | 34755184 | 34755431 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS22 | 34755184 | 34755431 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon23 | 34757959 | 34758132 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS23 | 34757959 | 34758132 |
| chr_2 | g9032 | g9032.t1 | exon | g9032.t1.exon24 | 34758603 | 34758731 |
| chr_2 | g9032 | g9032.t1 | cds | g9032.t1.CDS24 | 34758603 | 34758731 |
| chr_2 | g9032 | g9032.t1 | TSS | g9032.t1 | NA | NA |
| chr_2 | g9032 | g9032.t1 | TTS | g9032.t1 | NA | NA |
Sequences
>g9032.t1 Gene=g9032 Length=3681
ATGTATTTTATTCAAAATCGTCCCAATCAAGTCATTCGTCCAATAAGCACAGATTCAAAT
GGAAGAGAAAAAGATGACTGTGGACTTGATAATGAAACCAATCAAATTATTAAGTCACAG
CGTTGGAAGAATTGGATATTGAATCGAATTGGTAGAAATAATGCTGTTGATACTGATAAC
AATATCTGTGAAATGAAATTTTCAAATAGTTCAAATGAGCTTCAGGCAATTTTAGTTGAT
AAAGAGAAAGAAAAAGAGTCAGATGTTTGTCTTCTTGTGGATTCACCATATCGAATTTTA
AGGGCTGCTGAGCGAGGAAATTTGGATGAATTTGTTCGTTTATATCAATTTGATAACTCA
AGATTGGCTGTTAAAGATGCAAAGGGTAGAACAGTTTCACATCAAGCAGCTGCTCGAAAT
AAAGTAAACATTCTTCAATATATTTATGAAATGCATGGTGACCTTAACTGTCAAGATAAT
TCTGGTGGAACACCATTGCATGTCGCTGTTGAGAACGATTCTCTAGAGGCAATCGAGTTT
TTGCTAAAAATTCCTGTCACAACAAATATTTTAAACGAAAGAAATTTTTCGCCTCTTCAT
CTTGCCACTGTATTAAATAAGGTTCAGGCACTTCATGTTATGTCAAAACATCGTGATGTA
ATAGATATACAACAAGGAGGTGAACACGGAAGAACTGCATTGCATTTGGCTGCCATTCAT
GACCACGAAGAGTGTGCAAGAATTCTGATAACTGACTTTGAAGCATCACCAAGGGCTGCT
TGCAATTTGGGCTATTATCCAATACACGAGGCAGCAAAAAACGCAAGTAGCAAAACAATG
GAAGTCTTTTTGCAGTGGGGTGAATCAAAAGGTTGTACACGAGAAGAGATGATTTCTTTT
TATGATTCTGAGGGTAACTTACCTTTACATTCAGCAGTTCATGGAGGTGATATTAAAGCA
GTAGAATTGTGTTTAAAAAGTGGAGCTAAAATTTCAACACAGCAACACGATTTGTCTACT
CCGATTCATTTAGCATGCGCACAAGGAGCTTTAGAAATTGTTGAATTGATGTTTAAAATG
CAACCACAAGAGAAGAAAATTTGTCTCAGTTGTCCTGATATTCAGAAAATGACACCACTT
CATTGTGCATCAATGTTTGATCATCCACCACTTGTTGAATATTTGGTAAATGAAGGTGCC
GATATCAATGCACTAGATCGAGAACATAGATCACCTATATTACTTGCTGCTTCACGTGCA
GGTTGGCGAACAGTGCATGTTTTGATACGTTTGGGCGCTAATGTACACATTAAAGATGTC
AATCAACGCAATTTATTGCATTCAATAATTCTCAATGGCGGACGTTTGGAAGAGTTTGCA
GAAGAAATTAATGCGCATTCACAATGTAGTTGGAATGAGTTCCTTAATGAAAAGGACATA
TCAGGCTGCTCTCCACTTCATTATGCCAGTCGAGAAGGACACATTCGATCTCTAGAGAAT
CTAATCAGACTCGGTGCTTGTATTAATCTTAAAAATAATAACAACGAGAGCCCACTTCAT
TTTGCCGCACGCTACGGTCGATATAATACAGTAAAACAATTGCTAGATTCTGAGAAAGGA
ACTTTTATAATTAATGAGTGTGATGGAGAAGGATTAACACCACTTCATATTGCGAGTCAA
CAAGGACATACACGTGTTGTACAATTACTTCTATGTCGTGGTGCTTTACTACATCGTGAC
CATAATGGAAGGAATCCATTACATTTGGCCGCTATGAATAATTATACACAAACACTTGAG
CTACTTCACTCGGTTCACAGTCATTTATTGGATCAAACAGATAAGGATGGAAACACTCCC
CTTCATTTAGCTGCCATGGAGAATAAACCTAATGCTGTCGCTTTATTACTTTCCCTTGGA
TGTAAACTACTTTACAACAATCATGATTTATCTGCTATTGATTATGCAATTCATTATAAA
TATCCTGAAGCAGCATTAGCTATGGTAACACACGAGGAACGTGGAAATGAAGTTATGAAT
TTAAAAAGTGATAAACATCCATGTGTCACTTTAGCATTAATTGCATCAATGCCTAAAGTT
TTTGAAGCTGTGCAAGATAAATGCATTACTAAGGCAAATTGCAAAAAGGATTCAAAATCT
TTTTATATAAGATATTCATTTAGTTGTCTTCATATTCCACAATATTATGCGCAAATTGAT
GAGAAAACTGGTGATGCCGTTAATATCTCTGAGCCAATTCCTTTGCCAGCACTCAACGCA
ATGGTTAGTCATGGTCGTGTTGAACTTCTTGCTCATCCACTGAGTCAAAAATACCTTCAA
ATGAAATGGAACAGCTATGGAAAGTATTTTCACATTGCAAATTTGCTTCTTTATAGCATT
TTGTTATTTTTTATCACGATGTATTCGTCTCTTTTAATGAAAAATGGTATGAAAAGGTCA
TCACTTATGCAACAGCAGTATATCGAACTAACAAATGGAACCAACAACAAAACTAAAGCA
TTGGAAAATGAAAATTTTAAAATTGACATTGATTCTGGCATGTTCGTGTCTGGGACTGTA
ATTTTTGTTTACATTCTAGCAAGTACTATTCGAGAAATCATTCAAGCAACTCAAAAACGT
CATCATTATTTGCTCGATCCAATGAATTTAGTCTCATGGATTCTATATGGAAATGCACTT
ATAATGATATCACCAATTTTCACAAATGGTCATGTTTGTGATTATTTATTCTCAGCTGCA
TCACTTACAACTTTCTTATCTTGGTTCAATCTTTTGCTACATCTTCAACGATTTGATCAA
ATTGGGATTTATGTCGTGATGTTTCTCGAAATATTGCAAACATTGATAAAAGTTCTTATT
GTATTTTCGATTTTGATTGTCGCATTTGGACTTGCATTTTTCATTTTACTCTCGAACATC
CAACATCCACAGCCTAATCATCTCTCATTTACTACGATTCCAATGTCTCTTATGAGGACA
TTTTCAATGATGTTGAGTGAAGTTGATATTGTTGGCACTTTTATTCAACCATATCATTTG
AACCACTTACCTTATCCATATGCATCATTTATTATTCTCTTTTTATTCATGATACTTATG
CCAATTCTATTGATGAATTTACTTATTGGTTTGGCTGTTGGTGATATCGAAAGTGTAAGA
CGAAATGCACAATTAAAACGTTTAGCCATGCAAGTGGTCCTACATACAGAACTTGAACGT
AAATTACCACAAATGTGGCTAGAGAAAATCGACAAGCACGAATTAATTGAGTATCCGAAT
GAAGCAAAATGCAAATTGACACTTCTTGATTCTATTTTGAGAAAATGGTTTTGTAATCCA
TTCAATGAAAATGAAAATGCTGGTCTTGAACTTGTACTTGACAATGCAAATGAGGATTTT
ATGTTATATGAAATTGAAAAACAAAAGATGAAACTAAAAGAAATGTCGAAAATGATTGAA
CAACAACATCAATTACTTCGCTTGATTGTGCAGAAAATGGAAATCAAATCAGAAGCAGAC
GACGTCGATGAAGGTGTGCCTCTAAGGGAAAGCCGTCCTCTTTCAGCTATTTCAAATGAA
CATGTTACACGTTGGACATCACCAAGAATAAGAAAAAAGCTAAGAGCTGTGAAAAGTTTC
AGCAAAAGTTTTAATCAATAA
>g9032.t1 Gene=g9032 Length=1226
MYFIQNRPNQVIRPISTDSNGREKDDCGLDNETNQIIKSQRWKNWILNRIGRNNAVDTDN
NICEMKFSNSSNELQAILVDKEKEKESDVCLLVDSPYRILRAAERGNLDEFVRLYQFDNS
RLAVKDAKGRTVSHQAAARNKVNILQYIYEMHGDLNCQDNSGGTPLHVAVENDSLEAIEF
LLKIPVTTNILNERNFSPLHLATVLNKVQALHVMSKHRDVIDIQQGGEHGRTALHLAAIH
DHEECARILITDFEASPRAACNLGYYPIHEAAKNASSKTMEVFLQWGESKGCTREEMISF
YDSEGNLPLHSAVHGGDIKAVELCLKSGAKISTQQHDLSTPIHLACAQGALEIVELMFKM
QPQEKKICLSCPDIQKMTPLHCASMFDHPPLVEYLVNEGADINALDREHRSPILLAASRA
GWRTVHVLIRLGANVHIKDVNQRNLLHSIILNGGRLEEFAEEINAHSQCSWNEFLNEKDI
SGCSPLHYASREGHIRSLENLIRLGACINLKNNNNESPLHFAARYGRYNTVKQLLDSEKG
TFIINECDGEGLTPLHIASQQGHTRVVQLLLCRGALLHRDHNGRNPLHLAAMNNYTQTLE
LLHSVHSHLLDQTDKDGNTPLHLAAMENKPNAVALLLSLGCKLLYNNHDLSAIDYAIHYK
YPEAALAMVTHEERGNEVMNLKSDKHPCVTLALIASMPKVFEAVQDKCITKANCKKDSKS
FYIRYSFSCLHIPQYYAQIDEKTGDAVNISEPIPLPALNAMVSHGRVELLAHPLSQKYLQ
MKWNSYGKYFHIANLLLYSILLFFITMYSSLLMKNGMKRSSLMQQQYIELTNGTNNKTKA
LENENFKIDIDSGMFVSGTVIFVYILASTIREIIQATQKRHHYLLDPMNLVSWILYGNAL
IMISPIFTNGHVCDYLFSAASLTTFLSWFNLLLHLQRFDQIGIYVVMFLEILQTLIKVLI
VFSILIVAFGLAFFILLSNIQHPQPNHLSFTTIPMSLMRTFSMMLSEVDIVGTFIQPYHL
NHLPYPYASFIILFLFMILMPILLMNLLIGLAVGDIESVRRNAQLKRLAMQVVLHTELER
KLPQMWLEKIDKHELIEYPNEAKCKLTLLDSILRKWFCNPFNENENAGLELVLDNANEDF
MLYEIEKQKMKLKEMSKMIEQQHQLLRLIVQKMEIKSEADDVDEGVPLRESRPLSAISNE
HVTRWTSPRIRKKLRAVKSFSKSFNQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g9032.t1 | Coils | Coil | Coil | 1133 | 1153 | - |
| 18 | g9032.t1 | Coils | Coil | Coil | 1225 | 1226 | - |
| 16 | g9032.t1 | Gene3D | G3DSA:1.25.40.20 | - | 97 | 219 | 8.9E-22 |
| 15 | g9032.t1 | Gene3D | G3DSA:1.25.40.20 | - | 220 | 418 | 1.2E-43 |
| 14 | g9032.t1 | Gene3D | G3DSA:1.25.40.20 | - | 419 | 540 | 1.6E-22 |
| 13 | g9032.t1 | Gene3D | G3DSA:1.25.40.20 | - | 541 | 771 | 6.2E-29 |
| 7 | g9032.t1 | PANTHER | PTHR24123:SF116 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY A, MEMBER 1B | 99 | 1205 | 1.2E-219 |
| 8 | g9032.t1 | PANTHER | PTHR24123 | ANKYRIN REPEAT-CONTAINING | 99 | 1205 | 1.2E-219 |
| 9 | g9032.t1 | PRINTS | PR01415 | Ankyrin repeat signature | 230 | 245 | 2.9E-6 |
| 10 | g9032.t1 | PRINTS | PR01415 | Ankyrin repeat signature | 391 | 405 | 2.9E-6 |
| 4 | g9032.t1 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 101 | 183 | 2.1E-9 |
| 6 | g9032.t1 | Pfam | PF00023 | Ankyrin repeat | 229 | 257 | 0.0074 |
| 3 | g9032.t1 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 339 | 405 | 3.5E-9 |
| 1 | g9032.t1 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 512 | 575 | 1.3E-11 |
| 2 | g9032.t1 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 580 | 643 | 1.1E-9 |
| 5 | g9032.t1 | Pfam | PF00520 | Ion transport protein | 859 | 1063 | 6.5E-14 |
| 26 | g9032.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 788 | - |
| 33 | g9032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 789 | 813 | - |
| 20 | g9032.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 814 | 852 | - |
| 29 | g9032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 853 | 870 | - |
| 25 | g9032.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 871 | 889 | - |
| 27 | g9032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 890 | 908 | - |
| 19 | g9032.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 909 | 914 | - |
| 30 | g9032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 915 | 935 | - |
| 24 | g9032.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 936 | 954 | - |
| 32 | g9032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 955 | 977 | - |
| 21 | g9032.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 978 | 996 | - |
| 28 | g9032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 997 | 1015 | - |
| 23 | g9032.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1016 | 1026 | - |
| 31 | g9032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1027 | 1053 | - |
| 22 | g9032.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1054 | 1226 | - |
| 56 | g9032.t1 | ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 94 | 648 | 99.139 |
| 63 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 128 | 160 | 8.71 |
| 61 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 161 | 193 | 10.953 |
| 66 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 229 | 250 | 9.003 |
| 64 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 304 | 336 | 10.953 |
| 65 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 375 | 407 | 12.716 |
| 59 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 408 | 440 | 8.816 |
| 67 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 481 | 513 | 12.636 |
| 60 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 514 | 546 | 9.297 |
| 62 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 550 | 582 | 12.823 |
| 58 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 582 | 602 | 8.87 |
| 57 | g9032.t1 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 616 | 648 | 11.354 |
| 54 | g9032.t1 | SMART | SM00248 | ANK_2a | 128 | 157 | 150.0 |
| 46 | g9032.t1 | SMART | SM00248 | ANK_2a | 161 | 190 | 0.052 |
| 48 | g9032.t1 | SMART | SM00248 | ANK_2a | 194 | 223 | 310.0 |
| 42 | g9032.t1 | SMART | SM00248 | ANK_2a | 229 | 259 | 0.0094 |
| 45 | g9032.t1 | SMART | SM00248 | ANK_2a | 263 | 292 | 1600.0 |
| 43 | g9032.t1 | SMART | SM00248 | ANK_2a | 304 | 333 | 0.11 |
| 50 | g9032.t1 | SMART | SM00248 | ANK_2a | 337 | 367 | 1.9 |
| 51 | g9032.t1 | SMART | SM00248 | ANK_2a | 375 | 404 | 1.1E-5 |
| 44 | g9032.t1 | SMART | SM00248 | ANK_2a | 408 | 437 | 42.0 |
| 47 | g9032.t1 | SMART | SM00248 | ANK_2a | 481 | 510 | 0.0011 |
| 49 | g9032.t1 | SMART | SM00248 | ANK_2a | 514 | 546 | 0.13 |
| 55 | g9032.t1 | SMART | SM00248 | ANK_2a | 550 | 579 | 0.0023 |
| 53 | g9032.t1 | SMART | SM00248 | ANK_2a | 582 | 611 | 3.1 |
| 52 | g9032.t1 | SMART | SM00248 | ANK_2a | 616 | 645 | 0.0013 |
| 41 | g9032.t1 | SMART | SM00248 | ANK_2a | 648 | 681 | 4500.0 |
| 12 | g9032.t1 | SUPERFAMILY | SSF48403 | Ankyrin repeat | 102 | 453 | 7.32E-54 |
| 11 | g9032.t1 | SUPERFAMILY | SSF48403 | Ankyrin repeat | 377 | 671 | 2.74E-54 |
| 34 | g9032.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 790 | 812 | - |
| 37 | g9032.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 853 | 875 | - |
| 39 | g9032.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 890 | 909 | - |
| 40 | g9032.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 916 | 938 | - |
| 36 | g9032.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 958 | 980 | - |
| 35 | g9032.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1001 | 1020 | - |
| 38 | g9032.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1030 | 1052 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0005515 | protein binding | MF |
| GO:0005216 | ion channel activity | MF |
| GO:0006811 | ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K04984 (transient receptor potential cation channel subfamily A member 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed