Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g904 g904.t1 isoform g904.t1 6780800 6781597
chr_3 g904 g904.t1 exon g904.t1.exon1 6780800 6781597
chr_3 g904 g904.t1 cds g904.t1.CDS1 6780800 6781597
chr_3 g904 g904.t1 TSS g904.t1 NA NA
chr_3 g904 g904.t1 TTS g904.t1 NA NA

Sequences

>g904.t1 Gene=g904 Length=798
ATGACACAAGAATTAATTTGTGATTTTAAATATGAAGGTTGGCAATTTCTCAAGAAAACT
TATATTTGTGTGATAAAAAACCAAAAGTTTGAAAATTTTGAATTGAATCTTCAAGGAAAA
CATTTAAATGAACTTTCAAACAAAGATGTATCTGCAGTTTTTCTTATAAAATGTTCAATG
GAAAAAATTCCAATTTATACAAAGATTTTTCCCAATATGAAACATTTGATGATTCTTATG
TCTGATTTGACACACATTGAAAGTGATGACTTCAAAGAGTATACACAACTGACCCAATTA
TATATGACAAAAATTGAAATAACTTTCATGTCCAAAAACTTGTTTGAAAATTTAAAAAAT
TTAAAAATTTTATCACTTTTTGATATTAAAGTGGATTTAATAGAGCCTGAAACATTTGAT
GATATGAATCAGTTAGAAATTGTTGAATTATATAATTGTGGCTTTAAAAATATGCTCTAT
AGTGTTTATAATTCTAATCCAGGAAATGCAAGTCTTGAAGATATTAAAAATGAAATATTT
TTGAAATACCAAAAAACAAATTGGAAGAAAATTTCTAAAGAATTGTTAAAAGATGAAGCT
CTCAACGAAATAAAAATTATTTTGCCTCAAATAATGAAAGAAAATAAAATTACTGAAAAT
TTAAAATTATCAGATGTTTCAAGTATAACTTTTTGTGCCATAATAAATTTTACTCTTAAC
AATGAGCTTTCAACATCAAATAAAATAAATTTTATTCATTTGCTGATTATAAGCGAAAAG
TTCAAAATTAAAAATTAG

>g904.t1 Gene=g904 Length=265
MTQELICDFKYEGWQFLKKTYICVIKNQKFENFELNLQGKHLNELSNKDVSAVFLIKCSM
EKIPIYTKIFPNMKHLMILMSDLTHIESDDFKEYTQLTQLYMTKIEITFMSKNLFENLKN
LKILSLFDIKVDLIEPETFDDMNQLEIVELYNCGFKNMLYSVYNSNPGNASLEDIKNEIF
LKYQKTNWKKISKELLKDEALNEIKIILPQIMKENKITENLKLSDVSSITFCAIINFTLN
NELSTSNKINFIHLLIISEKFKIKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g904.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 17 261 0
1 g904.t1 SUPERFAMILY SSF52058 L domain-like 50 164 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed