General information for g9043.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase.
Parent gene
- The parent gene g9043 is located on chr_2: 34804903..34809487 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g9043 | g9043.t13 | TTS | g9043.t13 | 34804259 | 34804259 |
| chr_2 | g9043 | g9043.t13 | isoform | g9043.t13 | 34804828 | 34809487 |
| chr_2 | g9043 | g9043.t13 | exon | g9043.t13.exon1 | 34804828 | 34805451 |
| chr_2 | g9043 | g9043.t13 | cds | g9043.t13.CDS1 | 34805156 | 34805451 |
| chr_2 | g9043 | g9043.t13 | exon | g9043.t13.exon2 | 34806778 | 34807077 |
| chr_2 | g9043 | g9043.t13 | cds | g9043.t13.CDS2 | 34806778 | 34806982 |
| chr_2 | g9043 | g9043.t13 | exon | g9043.t13.exon3 | 34809442 | 34809487 |
| chr_2 | g9043 | g9043.t13 | TSS | g9043.t13 | 34809487 | 34809487 |
Sequences
>g9043.t13 Gene=g9043 Length=970
AGTCGTTTCTAACACATCATACGGTGTTCTCTTGTCGCAACACTAGACTAAACGGCAGTT
AAAATTAAATATTAACAACAGTAGCAGCTCTATATTTATTTTATCGCCCTTTTTCTAGCT
CTAACTCATCTATATCCAAATATGACAACATTACGCTGGGGTATAGCATCTGCTGGAAGA
ATTTCTAATGACTTTTGCGCTGCTTTATCAACACTTTCTAGTGATGATCACAAAATCATT
GCGGTTGCGGCTCGTTCACTTGAGAGTGCTAAGAAATTTGCTGAAACTTTCGAGATTCCA
AGGTTTTATGAAGGTTATCAGCAATTAGCTGACGATAATGAAGTAGATGCTGTTTATATT
GGTGCAATCAATACTGCTCATTTAGAAATAGGTCTTATGATGTTAGATGCAGGCAAACAC
ATTCTCTGTGAAAAACCACTAACTTTAAATCACAAGCAGTCTGAAACTCTCCTTAAACGT
GCCAAGGAGAAGAAGTTATTTTGTATGGAAGCAATTTGGTCACGTTTCTTTCCATCATAC
AAGCATCTTAAAAGTCGCATTGACAACAACGATCTTGGAGATATTAAAGAGGTTGAAGTT
GAATTTGGTTTTGAATTGGAACATATCGATAGAGTTACGTAAGTAGTTCACTATTGCTGC
CTTTTTTTCCTTTTCTTCTCTACACAAAATTTATTTCAATTAAAATTCCATTAAAATAAG
AAGAAGTAAAAGGAAAAAGGAAGCAGCGGAAAAGGGTATTAAAAAGAGAAAGTATAAATA
AATTTATTATTGTTGTTCTTGTTATTTGTGTCCTTTTTTGCTACTCTCAACACACATTTT
CAAAAATAAAACTTTTTCTTTTTACTGCAGTAAAAAAGGACTCGGAGGTGGTACGATCTT
AGATCTTGGTGTATACACCATTCAAATCTCACAATTTGTCTTTCGCACCGAACCGATATC
AATAAAGGCG
>g9043.t13 Gene=g9043 Length=166
MTTLRWGIASAGRISNDFCAALSTLSSDDHKIIAVAARSLESAKKFAETFEIPRFYEGYQ
QLADDNEVDAVYIGAINTAHLEIGLMMLDAGKHILCEKPLTLNHKQSETLLKRAKEKKLF
CMEAIWSRFFPSYKHLKSRIDNNDLGDIKEVEVEFGFELEHIDRVT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9043.t13 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 123 | 0.0e+00 |
| 6 | g9043.t13 | Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 124 | 166 | 7.9e-06 |
| 2 | g9043.t13 | PANTHER | PTHR22604 | OXIDOREDUCTASES | 2 | 165 | 0.0e+00 |
| 3 | g9043.t13 | PANTHER | PTHR22604:SF105 | TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE | 2 | 165 | 0.0e+00 |
| 1 | g9043.t13 | Pfam | PF01408 | Oxidoreductase family, NAD-binding Rossmann fold | 4 | 122 | 0.0e+00 |
| 4 | g9043.t13 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 156 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed