General information for g905.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Beta-1,3-glucan-binding protein.
Parent gene
- The parent gene g905 is located on chr_3: 6782702..6784002 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g905 | g905.t1 | TTS | g905.t1 | 6782608 | 6782608 |
| chr_3 | g905 | g905.t1 | isoform | g905.t1 | 6782702 | 6784002 |
| chr_3 | g905 | g905.t1 | exon | g905.t1.exon1 | 6782702 | 6783262 |
| chr_3 | g905 | g905.t1 | cds | g905.t1.CDS1 | 6782702 | 6783262 |
| chr_3 | g905 | g905.t1 | exon | g905.t1.exon2 | 6783315 | 6783363 |
| chr_3 | g905 | g905.t1 | cds | g905.t1.CDS2 | 6783315 | 6783363 |
| chr_3 | g905 | g905.t1 | exon | g905.t1.exon3 | 6783417 | 6783725 |
| chr_3 | g905 | g905.t1 | cds | g905.t1.CDS3 | 6783417 | 6783725 |
| chr_3 | g905 | g905.t1 | exon | g905.t1.exon4 | 6783782 | 6784002 |
| chr_3 | g905 | g905.t1 | cds | g905.t1.CDS4 | 6783782 | 6784002 |
| chr_3 | g905 | g905.t1 | TSS | g905.t1 | 6784015 | 6784015 |
Sequences
>g905.t1 Gene=g905 Length=1140
ATGTTGATCACGAAACATCTTTTGCTTGAAATTTCATTAACAATTTTCATCCGATTGTCA
TTAGCACAGATTTCTGTAACTACAGCAAGTGGCACGCGAGCTCCAGTTGGGCCATTTAGA
CGTGGTCAATTAATTTTTGAAGACAACTTTGAATTCCTCGATCATGAAAAATGGGAACAT
GAAAATACGATGGCAGGCGGTGGAAATAATGAGTTTCAATTCTACACAAACAATCGTTCA
AATTCATATTGTGAAGATGGAAAATTACATATTGTACCAACACCATTTGGTTTAGACACA
GGTGAAGATTTTTTAAGAAGTGGAACTTTGGACATTCATGGAGGTCAACCTGCTGATTAT
TGTACAAATCATGCAAATAATGGTTGCTTAAGAACTGGTACACAAGAATCAATTTTGCCA
CCTATAAAAAGTGCTAGAATGAGAACAGTTCAGTCATTTAATTTTAAATACGGAATTTTA
GAAATTCGTGCTAAAAATCCTACTGGTGATTGGTTATGGCCTGCTCTTTGGTTAATGCCA
AAGAAATCAGTCTATGGAACTTGGCCTTCAAGTGGCGAGATTGACTTAATGGAAGCAAGA
GGAAATTTAAAAGTTGTAGAACCTGATGGAAAAGACATGGGAGTTCAAAGAGTTGAATCG
ACTTTACATTTTGGACCATCATGGTATTTGAATGGTTTTTATCTTACAAACTTTGAAACA
CATCGCGATGAAGGATTTAATAATGATTTTCATGTCTATAGACTTGGATGGACTGAAACA
ACAATGGAATTTTCTGTTGATAACAAAGTAATTGGATTTGTCAATGCAAGTGAAACTGGT
GGGTTTTGGAAACGTGGACTATTTGATGAGAAAGAACCTGGTCGTGATAATCCATGGAAG
CATGGCACAATTATGGCACCTTTTGATCAAGAATTTTTCATCATAATGAATGTTGCTGTT
GGAAGTACTGTTTATTTTGGAGATGATTTAATCAATGACCCTGAAAAGCCATGGCGAAAT
GACGATGAATTTGCAATGACAAAGTTTTGGGATGCACGAAATGATTGGTTACCCACTTGG
AATATTGGAACTGATTCTTCACACTTACAAGTTGATTATGTTAGAGTTTATGCTTTATAA
>g905.t1 Gene=g905 Length=379
MLITKHLLLEISLTIFIRLSLAQISVTTASGTRAPVGPFRRGQLIFEDNFEFLDHEKWEH
ENTMAGGGNNEFQFYTNNRSNSYCEDGKLHIVPTPFGLDTGEDFLRSGTLDIHGGQPADY
CTNHANNGCLRTGTQESILPPIKSARMRTVQSFNFKYGILEIRAKNPTGDWLWPALWLMP
KKSVYGTWPSSGEIDLMEARGNLKVVEPDGKDMGVQRVESTLHFGPSWYLNGFYLTNFET
HRDEGFNNDFHVYRLGWTETTMEFSVDNKVIGFVNASETGGFWKRGLFDEKEPGRDNPWK
HGTIMAPFDQEFFIIMNVAVGSTVYFGDDLINDPEKPWRNDDEFAMTKFWDARNDWLPTW
NIGTDSSHLQVDYVRVYAL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g905.t1 | PANTHER | PTHR10963:SF55 | EXTRACELLULAR AGARASE | 17 | 378 | 2.5E-89 |
| 3 | g905.t1 | PANTHER | PTHR10963 | GLYCOSYL HYDROLASE-RELATED | 17 | 378 | 2.5E-89 |
| 1 | g905.t1 | Pfam | PF00722 | Glycosyl hydrolases family 16 | 139 | 278 | 3.9E-16 |
| 8 | g905.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 9 | g905.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 10 | g905.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 17 | - |
| 11 | g905.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 22 | - |
| 7 | g905.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 379 | - |
| 6 | g905.t1 | ProSiteProfiles | PS51762 | Glycosyl hydrolases family 16 (GH16) domain profile. | 27 | 379 | 24.252 |
| 4 | g905.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 40 | 378 | 4.58E-63 |
| 5 | g905.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 22 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed