General information for g906.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Beta-1,3-glucan-binding protein.
Parent gene
- The parent gene g906 is located on chr_3: 6784119..6789037 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g906 | g906.t2 | TTS | g906.t2 | 6784076 | 6784076 |
| chr_3 | g906 | g906.t2 | isoform | g906.t2 | 6784119 | 6785122 |
| chr_3 | g906 | g906.t2 | exon | g906.t2.exon1 | 6784119 | 6784737 |
| chr_3 | g906 | g906.t2 | cds | g906.t2.CDS1 | 6784119 | 6784733 |
| chr_3 | g906 | g906.t2 | exon | g906.t2.exon2 | 6784818 | 6785122 |
| chr_3 | g906 | g906.t2 | TSS | g906.t2 | NA | NA |
Sequences
>g906.t2 Gene=g906 Length=924
ACCAACAATCGTTCAAACTCATACACTGAAAATGGAATTCTTCATATTGCACCAACACTT
GTAGCTGATGAATATGGTGAAAATTTCTTAACAACTGGTACGATAAGTCTTCATGGAGGT
CAACCTGCTGATCAATGTACAAATCCAGCTTATTGGGGTTGTGAAAGAACAGGAAATACA
GTCAACATTCTCAATCCTGTCAAAAGTGCACGACTTCGTAGCATTCATTCATTTGCTTTT
AAATATGGAATTGTCGAAGTTCGCGCAAAGTTGCCTGCTGGTGATTGGTTATGGCCTGCT
ATTTGGTTGATGCCAAAGAAAAATTTCTATGGCTCTTGGCCATCAAGTGGAGAAATTGAT
TTAGTTGAAGGTCGCGGTAATCGCAATCTCTTTAATGGAGAAAATGTAAATGTTGGTGTA
GGTGAAGTTGGCAGCACACTTCATTATGGTCCAGTTTGGAATTTAAATGGTTATCCATAC
GCAAATTTTTTAAAGCACTCAACAGTTGGCTTCAATGAAGATTTTCACGTATATCGACTT
GGGTGGACATCGAATGTTCTTGAATTTTCTGTTGATAACGAAATAATTGGTTCAATTAAT
ATCACAGCAGATGGAGATTTTTGGACGCGTGGTCGATTTGATGAGCGTGAACCTGGTAGA
GAAAATCCATGGAAAAGAAATTCTAAAATTGCACCATTTGATCAAGAATTTTATATCATT
ATGAATTTGGCTGTTGGTGGAACTAATGGATATTTCCCTGATAATTTGAGAAATGAAGGA
AGTGAAAAGCCATGGTTGAATACTTCACCACAAGCTTTGACTGATTTCTGGAATGGAAGA
GAAGGTTGGCTTCCTACATGGAATTTAGGAGTTGATGATAGTTCACATTTGCAAGTTGAT
TATGTTAGAATTTATGCCGTGTAA
>g906.t2 Gene=g906 Length=204
MPKKNFYGSWPSSGEIDLVEGRGNRNLFNGENVNVGVGEVGSTLHYGPVWNLNGYPYANF
LKHSTVGFNEDFHVYRLGWTSNVLEFSVDNEIIGSINITADGDFWTRGRFDEREPGRENP
WKRNSKIAPFDQEFYIIMNLAVGGTNGYFPDNLRNEGSEKPWLNTSPQALTDFWNGREGW
LPTWNLGVDDSSHLQVDYVRIYAV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g906.t2 | PANTHER | PTHR10963:SF55 | EXTRACELLULAR AGARASE | 1 | 203 | 0.000000 |
| 3 | g906.t2 | PANTHER | PTHR10963 | GLYCOSYL HYDROLASE-RELATED | 1 | 203 | 0.000000 |
| 1 | g906.t2 | Pfam | PF00722 | Glycosyl hydrolases family 16 | 9 | 96 | 0.000011 |
| 5 | g906.t2 | ProSiteProfiles | PS51762 | Glycosyl hydrolases family 16 (GH16) domain profile. | 1 | 204 | 15.895000 |
| 4 | g906.t2 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1 | 202 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed