General information for g908.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g908 is located on chr_3: 6799431..6804922 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g908 | g908.t1 | isoform | g908.t1 | 6799431 | 6804922 |
| chr_3 | g908 | g908.t1 | exon | g908.t1.exon1 | 6799431 | 6799977 |
| chr_3 | g908 | g908.t1 | cds | g908.t1.CDS1 | 6799431 | 6799977 |
| chr_3 | g908 | g908.t1 | exon | g908.t1.exon2 | 6800354 | 6800473 |
| chr_3 | g908 | g908.t1 | cds | g908.t1.CDS2 | 6800354 | 6800473 |
| chr_3 | g908 | g908.t1 | exon | g908.t1.exon3 | 6800533 | 6800752 |
| chr_3 | g908 | g908.t1 | cds | g908.t1.CDS3 | 6800533 | 6800752 |
| chr_3 | g908 | g908.t1 | exon | g908.t1.exon4 | 6804814 | 6804922 |
| chr_3 | g908 | g908.t1 | cds | g908.t1.CDS4 | 6804814 | 6804922 |
| chr_3 | g908 | g908.t1 | TSS | g908.t1 | NA | NA |
| chr_3 | g908 | g908.t1 | TTS | g908.t1 | NA | NA |
Sequences
>g908.t1 Gene=g908 Length=996
ATGATTGCTTTAGGCGGGGTAGCGTGTGCTCTAGGTGGAGCGGCATGGGGTGCTAGTGGT
CTTGCTGGTCAGCCATCAACTCATCTCACAGTCTCGCTACTGATGATTGGAATTGGAGTA
GTTTTGGTAACAATAAGTGGAGTCGCATGGCGAATAACGACAGCTGATGGTTCAGCATGT
TTTGGTATGGAAGGAACTGAATTTGATCATTGTGGTCGGCAACAATGTTTAAGAAACAAC
AGCATGTCACATGGACTTCTTTATCCTGAATTTCAACATCGACAACCGCCACCAACTTAT
CAAGCAAGCATGCAGGAATATCGATTGAGACTGTTACTTTTGGATCGTGATAGATCACAT
GGTAGGAGAATTGTTAATGCAGTAAGCAATCCACAATCATCATCTTCACCACCTCCAACT
TATCGATCAAATACTGGATCACAATTAAGATCGAATCGCGGTGCAGTTATTACCAATCCA
AATGGACCAAACAGCATTTTCAGCAATAACCATAACAATAGTCAAGCTGTTGTGAGTGGA
ATAGAAAACAGCGAAATTTCACCCGCAGCAAGTTATCAATTAAATGCAGTGCCATCAAAG
GAAGAAGCGAGGACAAGCAATTCAATTATAAAATTAACAACATCATCTCATCCTCATACT
ACCACAACCGCTACTACCACAATTACTCCAATGACGACGCAAATTAATCACAAAAATGGT
CGACAGCAAGTTTTAATTAATCACAGTACGGCGTCAGATGTGTCAAATGAAATTAATTTG
CATCATCAAAGTCAAGTTAAAGTGAATTCATGCGAGTCAAATTTGACAGTGTCATCTTCT
GCTAATGAAATTGTCACAGCCTCATCATTATGTAATAAAAATAATAATAGCTTTAATAGT
AATAATAACGATAGTGGAATGATTACAATTGTCACAATTAATAATGATAATGCAAATAAT
GATGACAGACGTACGATCAATAATAGCATTGTGTGA
>g908.t1 Gene=g908 Length=331
MIALGGVACALGGAAWGASGLAGQPSTHLTVSLLMIGIGVVLVTISGVAWRITTADGSAC
FGMEGTEFDHCGRQQCLRNNSMSHGLLYPEFQHRQPPPTYQASMQEYRLRLLLLDRDRSH
GRRIVNAVSNPQSSSSPPPTYRSNTGSQLRSNRGAVITNPNGPNSIFSNNHNNSQAVVSG
IENSEISPAASYQLNAVPSKEEARTSNSIIKLTTSSHPHTTTTATTTITPMTTQINHKNG
RQQVLINHSTASDVSNEINLHHQSQVKVNSCESNLTVSSSANEIVTASSLCNKNNNSFNS
NNNDSGMITIVTINNDNANNDDRRTINNSIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g908.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 148 | - |
| 1 | g908.t1 | PANTHER | PTHR37002:SF10 | AGAP007005-PA | 1 | 150 | 1.7E-30 |
| 2 | g908.t1 | PANTHER | PTHR37002 | AGAP007005-PA | 1 | 150 | 1.7E-30 |
| 8 | g908.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 9 | g908.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 10 | g908.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 12 | - |
| 12 | g908.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 7 | g908.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 32 | - |
| 11 | g908.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 33 | 53 | - |
| 6 | g908.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 54 | 331 | - |
| 4 | g908.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2 | 24 | - |
| 3 | g908.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 28 | 50 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed