General information for g9099.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9099 is located on chr_1: 110384..115146 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9099 | g9099.t2 | isoform | g9099.t2 | 109543 | 110771 |
| chr_1 | g9099 | g9099.t2 | exon | g9099.t2.exon1 | 109543 | 110771 |
| chr_1 | g9099 | g9099.t2 | TTS | g9099.t2 | 109554 | 109554 |
| chr_1 | g9099 | g9099.t2 | cds | g9099.t2.CDS1 | 110384 | 110722 |
| chr_1 | g9099 | g9099.t2 | TSS | g9099.t2 | NA | NA |
Sequences
>g9099.t2 Gene=g9099 Length=1229
AGATCCGATTGTTCAGACACGTGAACGTACCGACAGTACGAGTCAATATATGTTTAACAA
TAGAAGTAATGAGAGTATTGAGGAGGAAACTAACAATGATTTAGAGGCGGAGAGTGAAGA
TCAAAGTGGTGGTGATAGTAATAATAATGTAAAAAATGATGAGGAAGCAGAAATGGCAGA
AGAAGCTTTGCCATCAACCGATGACAAGACTGATGACGACAATGAGAACAACAATGTTAA
AACTCCACCTGAAATTTCAAAAGATGAAGTGATACACATTGAGGAAGAAGAAGATCAAGT
CAACTTGTCAACGATGAACAACAATGGCAGCAATAACTTAAATAACACACTAAATATTCA
ACGCGAAATGGCGATTGTCAGCGAATGAATTAACATAAAATAATTTTCGTTTCAATAATA
AGGGAATATAAAAATTATATTGAAATTTTGTGGCCTATATAAATTATAAAAGAAAAATGA
AAAACATAATAAAAATGGAGAAAATTACTGTTATATGCGGAACATTTTATTCTTCTCGTC
AAGAGTAAAATAATATGATTTTGTACATTATGCAGATTTAATTAAAAATAAATTATAATT
TTCTTGAAAATAGATTACTTAATAAAATGATTACAATTCATTCATTTAAAAACACCTAAA
TGCTAAAGCATAATTGTAACAACGATTTGAAAAATTTTTGAATTTGTGAATGTATGAAAA
AGGAAGAGATTATAAATTCAAATTTTCATTTTCCCTTTCTTACTTTTTTGTGATATTGGG
TGTATAAAATTGTTTATTTTCTATATTTTCATGTCTGTAAAAAAAGCTTTAATTTTCCAC
ATCCACAAAAAGATTTTGATAGTTTTTCTTTTATTTTACACACAAAAAAAAAAAGAAAAA
TAAAAAATATTGTTAAATTTATGTAATTTATCAAATAATTAAACTTTTATTTTCAATTAA
AGTGACAAAAATATCTTTCTCTTCTGGCTGATATTGATGAAGAGGATTTTATGATATGAA
TAAGATAAATTAGTTTTATATAATAAAAAATAAGAAATTGAATGGCAATTTTCACTGTTC
ATAGAAAATGAAAGGAAAAATTCATTAACATTTAAAAAGAGAATAAACAAGTATAGAAAA
ACAAATTACAATATTAAAATGAGCATAGATTTTAAAAAATAATAATTGCGCTAAAAAAAT
AAAATATAAAAAATTTATTTAAAACTTAT
>g9099.t2 Gene=g9099 Length=112
MFNNRSNESIEEETNNDLEAESEDQSGGDSNNNVKNDEEAEMAEEALPSTDDKTDDDNEN
NNVKTPPEISKDEVIHIEEEEDQVNLSTMNNNGSNNLNNTLNIQREMAIVSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g9099.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - |
| 1 | g9099.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 62 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
