General information for g9100.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9100 is located on chr_1: 117799..121227 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9100 | g9100.t1 | isoform | g9100.t1 | 117799 | 121227 |
| chr_1 | g9100 | g9100.t1 | exon | g9100.t1.exon1 | 117799 | 117888 |
| chr_1 | g9100 | g9100.t1 | cds | g9100.t1.CDS1 | 117799 | 117888 |
| chr_1 | g9100 | g9100.t1 | exon | g9100.t1.exon2 | 119402 | 119469 |
| chr_1 | g9100 | g9100.t1 | cds | g9100.t1.CDS2 | 119402 | 119469 |
| chr_1 | g9100 | g9100.t1 | exon | g9100.t1.exon3 | 119536 | 119601 |
| chr_1 | g9100 | g9100.t1 | cds | g9100.t1.CDS3 | 119536 | 119601 |
| chr_1 | g9100 | g9100.t1 | exon | g9100.t1.exon4 | 120063 | 120678 |
| chr_1 | g9100 | g9100.t1 | cds | g9100.t1.CDS4 | 120063 | 120678 |
| chr_1 | g9100 | g9100.t1 | exon | g9100.t1.exon5 | 120738 | 121012 |
| chr_1 | g9100 | g9100.t1 | cds | g9100.t1.CDS5 | 120738 | 121012 |
| chr_1 | g9100 | g9100.t1 | exon | g9100.t1.exon6 | 121086 | 121227 |
| chr_1 | g9100 | g9100.t1 | cds | g9100.t1.CDS6 | 121086 | 121227 |
| chr_1 | g9100 | g9100.t1 | TSS | g9100.t1 | NA | NA |
| chr_1 | g9100 | g9100.t1 | TTS | g9100.t1 | NA | NA |
Sequences
>g9100.t1 Gene=g9100 Length=1257
ATGCACGGCATACAGCATTTATTTCGACAGCACGCAATCGAGAAACAAACGAGTAGTGAC
AGTTGGCACTCAACTTACGGACGCACGATGAGTGCAAACGATTCCAATTCTGATCTTAAA
TCATCTTCACCTTGGAATCAAGATCGCATATTAGATCAATTGCATACAATGTCTTCTAGT
CCGCAACCTGTTCCAAACACAGTAAAATCTCCATCGCAAGAATATTCGCATAGTCTTGGT
AGTAGTTTTTCAAATAAATGGAAACGAAGTTCACCGGATCCTAGTAAGATGATGATGATG
GGTCGTAGTCCAAATATGCTTGATGTAAACTCTAAGAGGATTTTATCTACGACACCGTCA
CGCAAAGGTAGTCAACTAAGTGAACGTGTTGGTAGTCCTTCACTTTCAGGCTATCCTGGT
GTGAGAAGAGGCTCATTAGACGGTTATCAATCACCAGATAGGAACAATGGATTTTTTCCA
CATGATCTCGATGATATTTATGAATATAAAACGGATCATCAATATTTCACACATACGGGT
ACATCAAATGATGGACGAATTTCGATAGCATCAGATGCTCAACGAAATTCACTTTTTCGT
AATTATAATACACACTCTCTTGATGAGTACTCGATAGATAATTTACGTCGACCAACACGT
TTAGATAATTCGAGTTTTATAAAAAACCTAAATTCAGCCATTTCACAAAATAGCGTCGAT
AGCGGTAATCAATCTAGTTGCGGTTCATCAAATAATTCAAAAGAAAAATTATCTAATAAA
AATCATCACCATCATAGTATTCATGAAATGATAAAGCATTTTGGAAAGAAAGTACATATT
TGGCCGCGAAATCGTCATGATTCGATCAATGAAAATGAAGTTTCAAATACTGCTAATATC
GTTACGACACCAGAGCTAGAACCTGATAATTTTCGATCACGCTCAAAAAGTTTGGACGTC
ACATTTCAACGAAGAAAAATTCTTGACGATTGTGAATCGACTTATAAGATTTATAACAAA
ATCTTGAAAGAAGGTGCACATATGAGACGTGCGTCTGCTGAATTGGCTGAGCGAAGACGA
GCATCATTTGGTAGTAAAATGGGATTGAGAAGTGATGGAACTTTAGATCCACATCATGCA
GCAATTTTATTCAGAGATTCACGCGGGTCTTCAATTCGACCGAATACTTCATCGATAACT
GTTCGAGCATTTGTAGTCGATTCGCGTGGTGAGAATAGCCTTGCGTCAAAAGATTGA
>g9100.t1 Gene=g9100 Length=418
MHGIQHLFRQHAIEKQTSSDSWHSTYGRTMSANDSNSDLKSSSPWNQDRILDQLHTMSSS
PQPVPNTVKSPSQEYSHSLGSSFSNKWKRSSPDPSKMMMMGRSPNMLDVNSKRILSTTPS
RKGSQLSERVGSPSLSGYPGVRRGSLDGYQSPDRNNGFFPHDLDDIYEYKTDHQYFTHTG
TSNDGRISIASDAQRNSLFRNYNTHSLDEYSIDNLRRPTRLDNSSFIKNLNSAISQNSVD
SGNQSSCGSSNNSKEKLSNKNHHHHSIHEMIKHFGKKVHIWPRNRHDSINENEVSNTANI
VTTPELEPDNFRSRSKSLDVTFQRRKILDDCESTYKIYNKILKEGAHMRRASAELAERRR
ASFGSKMGLRSDGTLDPHHAAILFRDSRGSSIRPNTSSITVRAFVVDSRGENSLASKD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9100.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - |
| 1 | g9100.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 91 | - |
| 3 | g9100.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 93 | - |
| 5 | g9100.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 132 | - |
| 6 | g9100.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 154 | - |
| 2 | g9100.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 265 | - |
| 4 | g9100.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 255 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
