General information for g9102.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9102 is located on chr_1: 140407..148735 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9102 | g9102.t1 | isoform | g9102.t1 | 135504 | 140781 |
| chr_1 | g9102 | g9102.t1 | exon | g9102.t1.exon1 | 135504 | 135641 |
| chr_1 | g9102 | g9102.t1 | cds | g9102.t1.CDS1 | 135504 | 135641 |
| chr_1 | g9102 | g9102.t1 | exon | g9102.t1.exon2 | 138861 | 138983 |
| chr_1 | g9102 | g9102.t1 | cds | g9102.t1.CDS2 | 138861 | 138983 |
| chr_1 | g9102 | g9102.t1 | exon | g9102.t1.exon3 | 139046 | 139320 |
| chr_1 | g9102 | g9102.t1 | cds | g9102.t1.CDS3 | 139046 | 139320 |
| chr_1 | g9102 | g9102.t1 | exon | g9102.t1.exon4 | 139376 | 139649 |
| chr_1 | g9102 | g9102.t1 | cds | g9102.t1.CDS4 | 139376 | 139649 |
| chr_1 | g9102 | g9102.t1 | exon | g9102.t1.exon5 | 139765 | 140781 |
| chr_1 | g9102 | g9102.t1 | cds | g9102.t1.CDS5 | 139765 | 140781 |
| chr_1 | g9102 | g9102.t1 | TSS | g9102.t1 | NA | NA |
| chr_1 | g9102 | g9102.t1 | TTS | g9102.t1 | NA | NA |
Sequences
>g9102.t1 Gene=g9102 Length=1827
ATGGAAAACACATTGCTCATCACTGAGGAAAATGAAAATACTGAGACGAAAGAGACGGAG
GATGAAAACCCCGTTAAATTAAAAGTGGCAATGGCAAACAAACGCCTTAAGGAAGAATTT
TTTCGCGAAAATGAAATTAATATGACTACAGAGACAATGAATGAGGAATATGAAAATCAA
ATTGATCAATCAATTATGGATATGGAAAATATTGGGCATACTTATAATAGCAGTGATAGT
GAAGATGACGATGACGAAGAAAATATTTTAAATGATGACGATATGAAAATGAGAGCAACT
TATGGTCAACAAGTACCTCCAATACTTATGCCTTTTTATGAACGTCGTCGTTTATCCGAA
TGCAAAGAGGAATCAGAGACAGATGATGAGAATGAGGATGAAAAAACTATAAAACCAACA
ATTATTATAACAACAACAAATGGCACAGCACAACAAGTTCCAATATCGGATGATGTTTCA
CAAACAACAACAACAGCAACTACTCGAAGATTCGTTGTAACAAAAACCAAGGAAGAAGAA
ATTCAAATTTCACCAGCAATAACTTCTTCATTAGTCAAACAACCAGTTTCTATTTTAAAA
AAATCTCCTTCACCTCCTTCATATCAGAAGTCATTAAATATGTCACATTCACCCAAGAAT
GTTCGTTATGAAGCGAATGCACTTAAATTTGTTCCTGCTGAAAAAAATTCACACACAATT
CATTTTCCATGTTCAAATGATAGAGCAAATGTAAAAAATTTCTTTTCTCCACAAGGCATT
TTAAGTCCACGAATTGATAAGCGTTTTTTCGATACGTCTCTTGTTGAAATTCGCACTTCT
CAGAATCAACTTGCAAATAGCACAAAATCGCTTGACGATGGAGGTTCATGTCAACCAAAT
TCGGATATTTGGATTAAACGAAATGATTCAAAAAAATCGAATATAGTTGACGATAAGATT
AGCATCAGTAGTAGTGATAGTAATAGTATTACAGAAAATAATCGTAGTAGAGTTGATGAC
ACAGATGGAAGCTCATCAACGCGTCCACAAAGTGCGCCAGCAACACAACAGTACAAAAAG
TCAAAAAAATACGATAAAGAGGCTAAAAAAGAGCGACAACGCATCGAAAAGGATGCAATT
AAATTTAAGAAAGAGGCTGCAAAGCGAGAGAAAGAAGCTGCAAAGTTAGAAAAATTATCA
AAGAGTAATGAAAGGCTCGGTGGTCGTTCGGGATCATTAGAGAGACGAAAGAGTGGTGAA
GATAGTGTAATTAATCAATTTACAATTCATGGAATCGCATCACCTAATAAACGACCAACA
TTATTTGATGTATTTCGACGGAAAGATAGTAAGAAAGATAAGGAAATATCAAAAACTGGA
GCTGCAATTTCATCTGATAAAGATAGTGTTAGCTCTGGTAGTGGTGGTGGAATAATGAAT
AGTATGAAAGCTGCAATTTATAGTGGAAAAACAACATCAGTAGAAGCTCCTGAAATTAAA
AGTAAAAAAGTTCGAGACGGATCTGCACATCCACATGGAAACGTTGGGACTGGTAGCGAT
GCAAGATATTATCATACTGTAACAGCAGTAAGACGAGCAGATCAATCTAGGTCACCTATG
TTAAAAGTAATGGATCTCTTTAGACATCGTTCGAATTCGGCTGTTTCAGAAGCTGATAAA
CGTAAAGCTCGGGCAGCTCAACAACATCAACAGCAGCTAGCAGCTCAAAGTGAGTACTTA
ATTTTTTATATTAAATGTAATAAAAAATGGTTGAATTCATATAAAATATTTCGTCAAAAT
CATATTAAGAAATTATCAATTAAATAA
>g9102.t1 Gene=g9102 Length=608
MENTLLITEENENTETKETEDENPVKLKVAMANKRLKEEFFRENEINMTTETMNEEYENQ
IDQSIMDMENIGHTYNSSDSEDDDDEENILNDDDMKMRATYGQQVPPILMPFYERRRLSE
CKEESETDDENEDEKTIKPTIIITTTNGTAQQVPISDDVSQTTTTATTRRFVVTKTKEEE
IQISPAITSSLVKQPVSILKKSPSPPSYQKSLNMSHSPKNVRYEANALKFVPAEKNSHTI
HFPCSNDRANVKNFFSPQGILSPRIDKRFFDTSLVEIRTSQNQLANSTKSLDDGGSCQPN
SDIWIKRNDSKKSNIVDDKISISSSDSNSITENNRSRVDDTDGSSSTRPQSAPATQQYKK
SKKYDKEAKKERQRIEKDAIKFKKEAAKREKEAAKLEKLSKSNERLGGRSGSLERRKSGE
DSVINQFTIHGIASPNKRPTLFDVFRRKDSKKDKEISKTGAAISSDKDSVSSGSGGGIMN
SMKAAIYSGKTTSVEAPEIKSKKVRDGSAHPHGNVGTGSDARYYHTVTAVRRADQSRSPM
LKVMDLFRHRSNSAVSEADKRKARAAQQHQQQLAAQSEYLIFYIKCNKKWLNSYKIFRQN
HIKKLSIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9102.t1 | Coils | Coil | Coil | 365 | 404 | - |
| 7 | g9102.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 1 | g9102.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 376 | - |
| 5 | g9102.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 332 | - |
| 3 | g9102.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 358 | - |
| 4 | g9102.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 376 | - |
| 2 | g9102.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 419 | - |
| 6 | g9102.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 475 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
