General information for g9117.t71
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Trifunctional enzyme subunit alpha, mitochondrial.
Parent gene
- The parent gene g9117 is located on chr_1: 221472..222354 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9117 | g9117.t71 | TTS | g9117.t71 | 220513 | 220513 |
| chr_1 | g9117 | g9117.t71 | isoform | g9117.t71 | 221259 | 222354 |
| chr_1 | g9117 | g9117.t71 | exon | g9117.t71.exon1 | 221259 | 221272 |
| chr_1 | g9117 | g9117.t71 | cds | g9117.t71.CDS1 | 221259 | 221272 |
| chr_1 | g9117 | g9117.t71 | exon | g9117.t71.exon2 | 221337 | 221401 |
| chr_1 | g9117 | g9117.t71 | cds | g9117.t71.CDS2 | 221337 | 221401 |
| chr_1 | g9117 | g9117.t71 | exon | g9117.t71.exon3 | 221472 | 221877 |
| chr_1 | g9117 | g9117.t71 | cds | g9117.t71.CDS3 | 221472 | 221877 |
| chr_1 | g9117 | g9117.t71 | exon | g9117.t71.exon4 | 222003 | 222165 |
| chr_1 | g9117 | g9117.t71 | cds | g9117.t71.CDS4 | 222003 | 222072 |
| chr_1 | g9117 | g9117.t71 | exon | g9117.t71.exon5 | 222265 | 222354 |
| chr_1 | g9117 | g9117.t71 | TSS | g9117.t71 | NA | NA |
Sequences
>g9117.t71 Gene=g9117 Length=738
TTTCAGTTTTTTTCCCTCTGACTGAATTTTAAAAAAAAATTAAATTTTTATAATTTGTAG
TTTTTTAGGAGTAATAGTTTTTAACTAATTCTTGTGTTGTGTTGGATGTTAAAAGTGAAA
CCTTTGGATAAGATTGAAATTCATTAAAATAATTGAAGAATAGTAAATTAAAATCATCAC
ATTATGGCTAGTTTGCGAGTTAAAGGATTTTTATCTACTATTACACGAGTGAAGAGAATT
GGTCTGCAGAATTCTTCTATCAACCAATTTAATCGTAATTGTTCATCGACGTCGGCAAAA
AATATCAAAACGTCCATTGTTGATAATGTACTTGTAATCAAATTAGATCAACCAGGCTCA
AAAGTTAATACTTTAGGAAAACAAATTACTAATGAATTTGAAGCAGTTCTTAAAGAGTTT
GAGACAAATCCAGCTGTAAAGTCTGCTGTTCTCATATCTGGCAAGCCATCTTGTTTCGTA
GCTGGCGCAGATATAACAATGTTAGAAGAATGTAAAACAGAAAATGATGCCAGGAAGATC
AGTCATGAAGCTCAAATTATGTTTGATCGAATGGAAAAGTCAAATAAGCCCATTGTCTGT
GCAATTCATGGAACATGTTTTGGAGGCGGATTAGAATTGGCGCTAGCATGCCATTATAGA
ATCGCAACAAAAAGTAAAAAAACGGGTTTAGCTCTTCCTGAAGTTATGCTTGGCTTGTTA
CCTGGTGCTGGAGGAACG
>g9117.t71 Gene=g9117 Length=185
MASLRVKGFLSTITRVKRIGLQNSSINQFNRNCSSTSAKNIKTSIVDNVLVIKLDQPGSK
VNTLGKQITNEFEAVLKEFETNPAVKSAVLISGKPSCFVAGADITMLEECKTENDARKIS
HEAQIMFDRMEKSNKPIVCAIHGTCFGGGLELALACHYRIATKSKKTGLALPEVMLGLLP
GAGGT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9117.t71 | CDD | cd06558 | crotonase-like | 41 | 185 | 0 |
| 4 | g9117.t71 | Gene3D | G3DSA:3.90.226.10 | - | 36 | 185 | 0 |
| 2 | g9117.t71 | PANTHER | PTHR43612 | TRIFUNCTIONAL ENZYME SUBUNIT ALPHA | 26 | 185 | 0 |
| 1 | g9117.t71 | Pfam | PF00378 | Enoyl-CoA hydratase/isomerase | 47 | 185 | 0 |
| 3 | g9117.t71 | SUPERFAMILY | SSF52096 | ClpP/crotonase | 40 | 185 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
