Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g912 g912.t1 isoform g912.t1 6817408 6817710
chr_3 g912 g912.t1 exon g912.t1.exon1 6817408 6817710
chr_3 g912 g912.t1 cds g912.t1.CDS1 6817408 6817710
chr_3 g912 g912.t1 TSS g912.t1 NA NA
chr_3 g912 g912.t1 TTS g912.t1 NA NA

Sequences

>g912.t1 Gene=g912 Length=303
ATGCAAAACACTGACATGATTGATTTGGAGCAAAAATTGTCAATGCAAATGCGATTGACA
GAAGCAGCAAAAATGAAAGAGCTTGAACAGCAGAAAAACATGATTGCAGCCTTAAACCAA
AGAATTTTCATTCTCGAGAATGAAAATCAAATGTTGAAGCAAGAAAATGCACAAAATAAT
CAGAAAATCAATAATTTAAAGTTAAAAGTTACGGAAACTGCTGACGATATGAGTTACGAA
AATATCAAATTGAAGCATGAAGCTGTAATTTTTGGTGATTTTAAAAACAGTCATGGACGA
TAA

>g912.t1 Gene=g912 Length=100
MQNTDMIDLEQKLSMQMRLTEAAKMKELEQQKNMIAALNQRIFILENENQMLKQENAQNN
QKINNLKLKVTETADDMSYENIKLKHEAVIFGDFKNSHGR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g912.t1 Coils Coil Coil 21 69 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed