General information for g9127.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable phosphomannomutase.
Parent gene
- The parent gene g9127 is located on chr_1: 269716..270528 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9127 | g9127.t1 | TTS | g9127.t1 | 269611 | 269611 |
| chr_1 | g9127 | g9127.t1 | isoform | g9127.t1 | 269716 | 270528 |
| chr_1 | g9127 | g9127.t1 | exon | g9127.t1.exon1 | 269716 | 269860 |
| chr_1 | g9127 | g9127.t1 | cds | g9127.t1.CDS1 | 269716 | 269860 |
| chr_1 | g9127 | g9127.t1 | exon | g9127.t1.exon2 | 269921 | 270528 |
| chr_1 | g9127 | g9127.t1 | cds | g9127.t1.CDS2 | 269921 | 270528 |
| chr_1 | g9127 | g9127.t1 | TSS | g9127.t1 | 270549 | 270549 |
Sequences
>g9127.t1 Gene=g9127 Length=753
ATGTCAGCACGTGATGAAATTTTGCTATTGTTCGATGTTGATGGCACACTTACTCCTGCT
CGAAAATCAATTGAGCCGGATTTTGAAGACTTTCTTTATAAGAAAGTTAAATCGAAAGCA
ACGATTGGAGTCGTAAGCGGAAGTGATTTGACTAAAATTAAAGAGCAATTAAATGGTGAT
AGACTATTGAATGATTTTGACTATGTCTTTCCTGAAAATGGCTTAGTTTTCATTAAAAAT
GGAATTGAAATCAGCAAGCAATCTATTCAACTTCATTTAGGAGAGAAAAACATCAAAAAA
ATGATAAACTTTTGTCTTCATTATATTGCCGATCTTGACATTCCGATAAAAAGAGGAACT
TTTATTGATTTTCGAAATGGAATGATAAATATCTGTCCAATTGGAAGACAATGCACTTAT
GAGGAAAGATTAATGTTTAATAAGTACGATAATGAGCATCATGTAAGAGAGAAAATGATT
GATGCGCTAAAAGAGGCTTTTGCTGATATTGACATTACTTTTGCAATTGGTGGACAAATC
AGCATCGATGCATTCCCAAAAGGTTGGGACAAAAGCTATTGCTTGCAACATGTAATTAAT
GGAACAAATTTTAAAGAAATTCATTTCTTTGGAGATAAAACTTCAAAGGGTGGAAATGAT
TATGAAATATTTGCTGATTCGCGTACTATAGGACATACGGTTACAGATCCAAAAGACACT
GAAAGACAGCTTTCAGATTTACTTAATCTATAA
>g9127.t1 Gene=g9127 Length=250
MSARDEILLLFDVDGTLTPARKSIEPDFEDFLYKKVKSKATIGVVSGSDLTKIKEQLNGD
RLLNDFDYVFPENGLVFIKNGIEISKQSIQLHLGEKNIKKMINFCLHYIADLDIPIKRGT
FIDFRNGMINICPIGRQCTYEERLMFNKYDNEHHVREKMIDALKEAFADIDITFAIGGQI
SIDAFPKGWDKSYCLQHVINGTNFKEIHFFGDKTSKGGNDYEIFADSRTIGHTVTDPKDT
ERQLSDLLNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9127.t1 | CDD | cd02585 | HAD_PMM | 8 | 247 | 0 |
| 5 | g9127.t1 | Gene3D | G3DSA:3.40.50.1000 | - | 8 | 241 | 0 |
| 6 | g9127.t1 | Gene3D | G3DSA:3.30.1240.20 | - | 88 | 189 | 0 |
| 2 | g9127.t1 | PANTHER | PTHR10466 | PHOSPHOMANNOMUTASE | 1 | 249 | 0 |
| 3 | g9127.t1 | PANTHER | PTHR10466:SF8 | PHOSPHOMANNOMUTASE-RELATED | 1 | 249 | 0 |
| 1 | g9127.t1 | Pfam | PF03332 | Eukaryotic phosphomannomutase | 29 | 249 | 0 |
| 9 | g9127.t1 | SFLD | SFLDF00445 | alpha-phosphomannomutase | 3 | 249 | 0 |
| 10 | g9127.t1 | SFLD | SFLDS00003 | Haloacid Dehalogenase | 3 | 249 | 0 |
| 4 | g9127.t1 | SUPERFAMILY | SSF56784 | HAD-like | 8 | 244 | 0 |
| 7 | g9127.t1 | TIGRFAM | TIGR01484 | HAD-SF-IIB: HAD hydrolase, family IIB | 8 | 231 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004615 | phosphomannomutase activity | MF |
| GO:0009298 | GDP-mannose biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K17497 (phosphomannomutase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
