General information for g913.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g913 is located on chr_3: 6827513..6828855 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g913 | g913.t1 | isoform | g913.t1 | 6820076 | 6828855 |
| chr_3 | g913 | g913.t1 | exon | g913.t1.exon1 | 6820076 | 6820256 |
| chr_3 | g913 | g913.t1 | cds | g913.t1.CDS1 | 6820076 | 6820256 |
| chr_3 | g913 | g913.t1 | exon | g913.t1.exon2 | 6820630 | 6820749 |
| chr_3 | g913 | g913.t1 | cds | g913.t1.CDS2 | 6820630 | 6820749 |
| chr_3 | g913 | g913.t1 | exon | g913.t1.exon3 | 6820809 | 6821028 |
| chr_3 | g913 | g913.t1 | cds | g913.t1.CDS3 | 6820809 | 6821028 |
| chr_3 | g913 | g913.t1 | exon | g913.t1.exon4 | 6825062 | 6825249 |
| chr_3 | g913 | g913.t1 | cds | g913.t1.CDS4 | 6825062 | 6825249 |
| chr_3 | g913 | g913.t1 | exon | g913.t1.exon5 | 6827513 | 6828855 |
| chr_3 | g913 | g913.t1 | cds | g913.t1.CDS5 | 6827513 | 6828855 |
| chr_3 | g913 | g913.t1 | TSS | g913.t1 | NA | NA |
| chr_3 | g913 | g913.t1 | TTS | g913.t1 | NA | NA |
Sequences
>g913.t1 Gene=g913 Length=2052
ATGAAGCAAAGAGTGAATTGCAAATATTTTCTCAGTGATTGGAATCTATTTGGGAATGTT
TACACGTGCAAGGTTCAATGCGAGGTGATTTCTCAGAATTCTAATTTAGAATTTAATGGA
AAACATTGGATTTCAAAGGACAATTTTGATGTCAAAGGAATTTCATTTGTTGATTGCGTT
ATAACGAAAATTCCACAGGGTTTAAAAAGAACATTTCCAAGTTTGCAATTTTTGCAAATT
TACAACTCAAAGTTGAAAGTCATCGAACGTGAAGATTTGAAAGACTATTCAAGCTTTCTA
GCACTTCATTTTGGACATAATTTAATTGAATTTCTACCTGGTGATTTATTGACAAATTTT
AGAAACCTCGAAGTTCTTTCATTTAGCAGCAACAGAATTCAAATTATTGGACCGAATTTC
CTTGATGGATTAAGTAATTTAAAATTTGTGAGTTTTCGTAAGAATTTGTGCATCGATATG
TCTTTTGATATGATTGGAAGTTCAGGTAATGCAACATATCTTGATATTAAAGATAAAATT
CGAGAATTAAATGGTGTTAAGACAGAACAACCAAAAACGATTGACGTAAAGCCTATAAAT
AAGAATTTTTCTGATGTTCAAACTGAAAATGAAGTTTTAACTTTTCAAAATATTGAACTT
AAAGTCAAATGTGAACTCTTAAATGATGAAAATGCAAATATGGCTCAAGAAATTAAAGAA
TTAAAAGAAAAATTGCTAAAATTAGAAGAACAAAAATCAGCTGAACTTCAAGAAATGAAA
AAAAATTATGAGACTGGAATGCTTGGTGATTTTAAGAAAATTCTTGAGAATGAAAATTTC
AAAAATTTCACAATAACCGTTGATGATCAAGATTTTCCTGTTCATCGATTATTGATGGCA
GCTCGTAGTCCAATTTTTGCTCGAATGCTTCAATATCACACTGATGCAGACTCAATGAAT
TTAGTAGACATTTCAGTGGACACTTTTCGAATAATTCTCGATTTTATCTATACTGATAAG
CTTCCAAATGAGCCTGATATCGATTACACTCGAATTTTTACGTCTGCATCGAAGCTGAAA
ATTGAAAAGTTAAAAGAATTCGCTGAAATGAAGCTAATTGAGTCAATAAATTCTGAAAAT
GCCTTTGAACTTTTAATACTTGCCAACAAATGTGACAGTGAAAAACTTCGACAGAAATCA
TTTGAAGAAGTTAAAAATCTTTTTCCAAATAAGTTCATTGATGACAGTCTATCAACTCAA
ACTGACAAACTCAAAAAATTGCTTGATTTTAAAAAGAAGAAAGACAGCATGATACGACGA
ATGGATGATGAATTTGATTCGATGTCACCTTCAGAACATTCCGGTCGTAAGGGCTGCTGT
GGCCAATTTTTTCATAGTCCAAAATCATTGGGATTAATAGCAATGATTGCTTTAGGCGGT
GTAGCGTGTGCTCTAGGTGGAGCGGCATGGGGTGCTAGTGGTCTTGCTGGTCAGCCATCA
ACTCATCTCACAGTCTCGCTACTGATGATTGGAATTGGAGTAGTTTTAGTAACAATAAGT
GGAGTTGCATGGCGAATAACGACAGCTGATGGTTCAGCATGTTTTGGTATGGAAGGAACT
GAATTTGATCATTGTGGTCGGCAACAATGTTTAAGAAATAACAGCATGTCACATGGACTT
CTTTATCCTGAATTTCAACATCGACAACCGCCACCAACTTATCAAGCAAGCATGCAGGAA
TATCGATTGAGACTGTTACTTTTGGATCGTGATAGATCACATGGTAGGAGAATTGTTAAT
GCAGTAAGCAATCCACAATCATCATCTTCACCACCTCCAACTTATCGATCAAATACTGGA
TCACAATTAAGATCGAATCGCGGTGCAGTTATTACCAATCCAAATGGACCAAACAGCATT
TTCAGCAATAACCATAACAATAGTCAAGCTGTTGTGAGTGGAATAGAAAACAACGAAATT
TCATCCACAGCAAGTAATCAATTAAATGCAGTGCCATCAAGGAAGAAGCGAGGACAAGCA
ATTCAATTATAA
>g913.t1 Gene=g913 Length=683
MKQRVNCKYFLSDWNLFGNVYTCKVQCEVISQNSNLEFNGKHWISKDNFDVKGISFVDCV
ITKIPQGLKRTFPSLQFLQIYNSKLKVIEREDLKDYSSFLALHFGHNLIEFLPGDLLTNF
RNLEVLSFSSNRIQIIGPNFLDGLSNLKFVSFRKNLCIDMSFDMIGSSGNATYLDIKDKI
RELNGVKTEQPKTIDVKPINKNFSDVQTENEVLTFQNIELKVKCELLNDENANMAQEIKE
LKEKLLKLEEQKSAELQEMKKNYETGMLGDFKKILENENFKNFTITVDDQDFPVHRLLMA
ARSPIFARMLQYHTDADSMNLVDISVDTFRIILDFIYTDKLPNEPDIDYTRIFTSASKLK
IEKLKEFAEMKLIESINSENAFELLILANKCDSEKLRQKSFEEVKNLFPNKFIDDSLSTQ
TDKLKKLLDFKKKKDSMIRRMDDEFDSMSPSEHSGRKGCCGQFFHSPKSLGLIAMIALGG
VACALGGAAWGASGLAGQPSTHLTVSLLMIGIGVVLVTISGVAWRITTADGSACFGMEGT
EFDHCGRQQCLRNNSMSHGLLYPEFQHRQPPPTYQASMQEYRLRLLLLDRDRSHGRRIVN
AVSNPQSSSSPPPTYRSNTGSQLRSNRGAVITNPNGPNSIFSNNHNNSQAVVSGIENNEI
SSTASNQLNAVPSRKKRGQAIQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g913.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 283 | 359 | 1.31889E-17 |
| 8 | g913.t1 | Coils | Coil | Coil | 217 | 266 | - |
| 6 | g913.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 259 | 5.5E-17 |
| 7 | g913.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 268 | 410 | 5.7E-30 |
| 18 | g913.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 622 | - |
| 19 | g913.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 683 | - |
| 2 | g913.t1 | PANTHER | PTHR37002:SF10 | AGAP007005-PA | 449 | 624 | 7.1E-38 |
| 3 | g913.t1 | PANTHER | PTHR37002 | AGAP007005-PA | 449 | 624 | 7.1E-38 |
| 1 | g913.t1 | Pfam | PF00651 | BTB/POZ domain | 271 | 375 | 2.1E-18 |
| 10 | g913.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 469 | - |
| 13 | g913.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 491 | - |
| 9 | g913.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 492 | 502 | - |
| 12 | g913.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 503 | 524 | - |
| 11 | g913.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 525 | 683 | - |
| 20 | g913.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 281 | 345 | 16.383 |
| 17 | g913.t1 | SMART | SM00225 | BTB_4 | 281 | 376 | 4.8E-17 |
| 4 | g913.t1 | SUPERFAMILY | SSF52058 | L domain-like | 48 | 178 | 2.14E-17 |
| 5 | g913.t1 | SUPERFAMILY | SSF54695 | POZ domain | 261 | 376 | 1.26E-20 |
| 16 | g913.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 492 | - |
| 15 | g913.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 502 | 524 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed