Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase D5.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9134 g9134.t14 isoform g9134.t14 382758 384396
chr_1 g9134 g9134.t14 exon g9134.t14.exon1 382758 383241
chr_1 g9134 g9134.t14 cds g9134.t14.CDS1 382930 383241
chr_1 g9134 g9134.t14 exon g9134.t14.exon2 383855 383994
chr_1 g9134 g9134.t14 cds g9134.t14.CDS2 383855 383994
chr_1 g9134 g9134.t14 exon g9134.t14.exon3 384140 384233
chr_1 g9134 g9134.t14 cds g9134.t14.CDS3 384140 384233
chr_1 g9134 g9134.t14 exon g9134.t14.exon4 384307 384396
chr_1 g9134 g9134.t14 cds g9134.t14.CDS4 384307 384396
chr_1 g9134 g9134.t14 TSS g9134.t14 385195 385195
chr_1 g9134 g9134.t14 TTS g9134.t14 NA NA

Sequences

>g9134.t14 Gene=g9134 Length=808
ATGGCGCCAATCGTCCTTTATCACTTTCCACCGTCGGCACCTTCAAGAGTCGCTCTGCTT
ACAATACGTAATCTAAATGTGGATGCTGAGGTCAAACAAGTAAATCTTTTTGCAAAAGAG
CAGCTTTCACCTGAATTTATAAAAATGAATCCTCAACATACTGTTCCAACTTTAGATGAT
AACGCTATTGCACAGTATTTAGTTGAAACTAGAGGTTCTAGTGACAGCCATCTTTACCCA
AAAGATCCTAAAGAACGTGCCTTAGTTAATCAACGTCTTTATTTTGATGCTGGTACTCTT
TATCCAAGAGTTCGTGCAATTGCATATCCAGTTTTGTTCTTAGGAGAAAAGAAAATCTCT
GATGAAAAGCGTAATCACATACTCGATGCATTTACTTATATGGAAAACTTTTTGGAAGGC
AGAAAATGGTTTTGTGGTGACCATTTGACAATTGCTGATCTGTCTTTGCTTGCGTCACTC
TCATCAATTATTCATATTGGCGCATCACTTCATAATTATCCAAATCTTAGACGTTGGTAT
GAACAATGTGCAGATATCAATGGTTATGAAGAAAATGATGAAGGAGCTAAAATTTTCGGT
GAGAGGGTTAAGAGTCTTCTTGATGACAAATTTTAAATGAATCTCCTAACAAGAAAATGA
ACAATAAAAAGGCATGCAGTAAGAAATGTTAAATAATTTTCATTCTTTTTCAGTATTCGC
ACATAATTTGAGAAAATTTGCATGCAAATGCTTTTGCCTAATGACTGTCACTGTTCGTGA
TGAAAAGACAAAGATTGTCGCTCAATGA

>g9134.t14 Gene=g9134 Length=211
MAPIVLYHFPPSAPSRVALLTIRNLNVDAEVKQVNLFAKEQLSPEFIKMNPQHTVPTLDD
NAIAQYLVETRGSSDSHLYPKDPKERALVNQRLYFDAGTLYPRVRAIAYPVLFLGEKKIS
DEKRNHILDAFTYMENFLEGRKWFCGDHLTIADLSLLASLSSIIHIGASLHNYPNLRRWY
EQCADINGYEENDEGAKIFGERVKSLLDDKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g9134.t14 CDD cd03177 GST_C_Delta_Epsilon 84 200 0.000
8 g9134.t14 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 72 0.000
7 g9134.t14 Gene3D G3DSA:1.20.1050.10 - 74 209 0.000
3 g9134.t14 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 203 0.000
4 g9134.t14 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 203 0.000
1 g9134.t14 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 70 0.000
2 g9134.t14 Pfam PF14497 Glutathione S-transferase, C-terminal domain 116 185 0.000
10 g9134.t14 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 75 11.970
9 g9134.t14 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 82 206 21.224
12 g9134.t14 SFLD SFLDG01153 Main.4: Theta-like 4 206 0.000
13 g9134.t14 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 4 206 0.000
5 g9134.t14 SUPERFAMILY SSF52833 Thioredoxin-like 4 86 0.000
6 g9134.t14 SUPERFAMILY SSF47616 GST C-terminal domain-like 75 195 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed