General information for g9134.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase D5.
Parent gene
- The parent gene g9134 is located on chr_1: 384164..385196 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9134 | g9134.t16 | isoform | g9134.t16 | 382758 | 384396 |
| chr_1 | g9134 | g9134.t16 | exon | g9134.t16.exon1 | 382758 | 383241 |
| chr_1 | g9134 | g9134.t16 | cds | g9134.t16.CDS1 | 382930 | 383241 |
| chr_1 | g9134 | g9134.t16 | exon | g9134.t16.exon2 | 383855 | 384005 |
| chr_1 | g9134 | g9134.t16 | cds | g9134.t16.CDS2 | 383855 | 384005 |
| chr_1 | g9134 | g9134.t16 | exon | g9134.t16.exon3 | 384135 | 384233 |
| chr_1 | g9134 | g9134.t16 | cds | g9134.t16.CDS3 | 384135 | 384148 |
| chr_1 | g9134 | g9134.t16 | exon | g9134.t16.exon4 | 384307 | 384396 |
| chr_1 | g9134 | g9134.t16 | TSS | g9134.t16 | 385195 | 385195 |
| chr_1 | g9134 | g9134.t16 | TTS | g9134.t16 | NA | NA |
Sequences
>g9134.t16 Gene=g9134 Length=824
ATGGCGCCAATCGTCCTTTATCACTTTCCACCGTCGGCACCTTCAAGAGTCGCTCTGCTT
ACAATACGTAATCTAAATGTGGATGCTGAGGTCAAACAAGTAAATCTTTTTGCAAAAGAG
CAGCTTTCACCTGAATTTATAAAAATGAATCCTCAACATACTGTTCCAACTTTAGATGAT
AACGGTACGAAAATTCTTAGCTATTGCACAGTATTTAGTTGAAACTAGAGGTTCTAGTGA
CAGCCATCTTTACCCAAAAGATCCTAAAGAACGTGCCTTAGTTAATCAACGTCTTTATTT
TGATGCTGGTACTCTTTATCCAAGAGTTCGTGCAATTGCATATCCAGTTTTGTTCTTAGG
AGAAAAGAAAATCTCTGATGAAAAGCGTAATCACATACTCGATGCATTTACTTATATGGA
AAACTTTTTGGAAGGCAGAAAATGGTTTTGTGGTGACCATTTGACAATTGCTGATCTGTC
TTTGCTTGCGTCACTCTCATCAATTATTCATATTGGCGCATCACTTCATAATTATCCAAA
TCTTAGACGTTGGTATGAACAATGTGCAGATATCAATGGTTATGAAGAAAATGATGAAGG
AGCTAAAATTTTCGGTGAGAGGGTTAAGAGTCTTCTTGATGACAAATTTTAAATGAATCT
CCTAACAAGAAAATGAACAATAAAAAGGCATGCAGTAAGAAATGTTAAATAATTTTCATT
CTTTTTCAGTATTCGCACATAATTTGAGAAAATTTGCATGCAAATGCTTTTGCCTAATGA
CTGTCACTGTTCGTGATGAAAAGACAAAGATTGTCGCTCAATGA
>g9134.t16 Gene=g9134 Length=158
MITVRKFLAIAQYLVETRGSSDSHLYPKDPKERALVNQRLYFDAGTLYPRVRAIAYPVLF
LGEKKISDEKRNHILDAFTYMENFLEGRKWFCGDHLTIADLSLLASLSSIIHIGASLHNY
PNLRRWYEQCADINGYEENDEGAKIFGERVKSLLDDKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9134.t16 | CDD | cd03177 | GST_C_Delta_Epsilon | 31 | 147 | 0.000 |
| 5 | g9134.t16 | Gene3D | G3DSA:1.20.1050.10 | - | 21 | 156 | 0.000 |
| 2 | g9134.t16 | PANTHER | PTHR43969:SF9 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 9 | 150 | 0.000 |
| 3 | g9134.t16 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 9 | 150 | 0.000 |
| 1 | g9134.t16 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 63 | 132 | 0.000 |
| 6 | g9134.t16 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 29 | 153 | 21.224 |
| 4 | g9134.t16 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 22 | 142 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed