Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase 1-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9134 g9134.t18 isoform g9134.t18 382758 384410
chr_1 g9134 g9134.t18 exon g9134.t18.exon1 382758 383241
chr_1 g9134 g9134.t18 cds g9134.t18.CDS1 383204 383241
chr_1 g9134 g9134.t18 exon g9134.t18.exon2 383851 383994
chr_1 g9134 g9134.t18 cds g9134.t18.CDS2 383851 383994
chr_1 g9134 g9134.t18 exon g9134.t18.exon3 384049 384072
chr_1 g9134 g9134.t18 cds g9134.t18.CDS3 384049 384072
chr_1 g9134 g9134.t18 exon g9134.t18.exon4 384140 384233
chr_1 g9134 g9134.t18 cds g9134.t18.CDS4 384140 384233
chr_1 g9134 g9134.t18 exon g9134.t18.exon5 384307 384410
chr_1 g9134 g9134.t18 cds g9134.t18.CDS5 384307 384396
chr_1 g9134 g9134.t18 TSS g9134.t18 385195 385195
chr_1 g9134 g9134.t18 TTS g9134.t18 NA NA

Sequences

>g9134.t18 Gene=g9134 Length=850
GGAGAGCACTTAGCATGGCGCCAATCGTCCTTTATCACTTTCCACCGTCGGCACCTTCAA
GAGTCGCTCTGCTTACAATACGTAATCTAAATGTGGATGCTGAGGTCAAACAAGTAAATC
TTTTTGCAAAAGAGCAGCTTTCACCTGAATTTATAAAAATGAATCCTCAACATACTGTTC
CAACTTTAGATGATAACGGATTTTATCTTTGGGAATCTCGTGCTATTGCACAGTATTTAG
TTGAAACTAGAGGTTCTAGTGACAGCCATCTTTACCCAAAAGATCCTAAAGAACGTGCCT
TAGTTAATCAACGTCTTTATTTTGATGCTGGTACTCTTTATCCAAGAGTTCGTGCAATTG
CAGTAATATCCAGTTTTGTTCTTAGGAGAAAAGAAAATCTCTGATGAAAAGCGTAATCAC
ATACTCGATGCATTTACTTATATGGAAAACTTTTTGGAAGGCAGAAAATGGTTTTGTGGT
GACCATTTGACAATTGCTGATCTGTCTTTGCTTGCGTCACTCTCATCAATTATTCATATT
GGCGCATCACTTCATAATTATCCAAATCTTAGACGTTGGTATGAACAATGTGCAGATATC
AATGGTTATGAAGAAAATGATGAAGGAGCTAAAATTTTCGGTGAGAGGGTTAAGAGTCTT
CTTGATGACAAATTTTAAATGAATCTCCTAACAAGAAAATGAACAATAAAAAGGCATGCA
GTAAGAAATGTTAAATAATTTTCATTCTTTTTCAGTATTCGCACATAATTTGAGAAAATT
TGCATGCAAATGCTTTTGCCTAATGACTGTCACTGTTCGTGATGAAAAGACAAAGATTGT
CGCTCAATGA

>g9134.t18 Gene=g9134 Length=129
MAPIVLYHFPPSAPSRVALLTIRNLNVDAEVKQVNLFAKEQLSPEFIKMNPQHTVPTLDD
NGFYLWESRAIAQYLVETRGSSDSHLYPKDPKERALVNQRLYFDAGTLYPRVRAIAVISS
FVLRRKENL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g9134.t18 CDD cd03045 GST_N_Delta_Epsilon 4 77 0.0000000
7 g9134.t18 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 79 0.0000000
6 g9134.t18 Gene3D G3DSA:1.20.1050.10 - 82 128 0.0000000
2 g9134.t18 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 116 0.0000000
3 g9134.t18 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 116 0.0000000
1 g9134.t18 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 80 0.0000000
9 g9134.t18 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 83 21.0580000
8 g9134.t18 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 90 129 7.8630000
11 g9134.t18 SFLD SFLDG00358 Main (cytGST) 5 118 0.0000000
12 g9134.t18 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 5 118 0.0000000
4 g9134.t18 SUPERFAMILY SSF52833 Thioredoxin-like 1 89 0.0000000
5 g9134.t18 SUPERFAMILY SSF47616 GST C-terminal domain-like 83 119 0.0000001

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed