General information for g9134.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase D5.
Parent gene
- The parent gene g9134 is located on chr_1: 384164..385196 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9134 | g9134.t23 | isoform | g9134.t23 | 382758 | 385165 |
| chr_1 | g9134 | g9134.t23 | exon | g9134.t23.exon1 | 382758 | 383241 |
| chr_1 | g9134 | g9134.t23 | cds | g9134.t23.CDS1 | 382930 | 383241 |
| chr_1 | g9134 | g9134.t23 | exon | g9134.t23.exon2 | 383855 | 383994 |
| chr_1 | g9134 | g9134.t23 | cds | g9134.t23.CDS2 | 383855 | 383994 |
| chr_1 | g9134 | g9134.t23 | exon | g9134.t23.exon3 | 384140 | 384233 |
| chr_1 | g9134 | g9134.t23 | cds | g9134.t23.CDS3 | 384140 | 384233 |
| chr_1 | g9134 | g9134.t23 | exon | g9134.t23.exon4 | 384307 | 384409 |
| chr_1 | g9134 | g9134.t23 | cds | g9134.t23.CDS4 | 384307 | 384396 |
| chr_1 | g9134 | g9134.t23 | exon | g9134.t23.exon5 | 385127 | 385165 |
| chr_1 | g9134 | g9134.t23 | TSS | g9134.t23 | 385195 | 385195 |
| chr_1 | g9134 | g9134.t23 | TTS | g9134.t23 | NA | NA |
Sequences
>g9134.t23 Gene=g9134 Length=860
TCTTTTTGTGGTCATTGCTTCAAAATAAATAAATTTTCGGAGAGCACTTAGCATGGCGCC
AATCGTCCTTTATCACTTTCCACCGTCGGCACCTTCAAGAGTCGCTCTGCTTACAATACG
TAATCTAAATGTGGATGCTGAGGTCAAACAAGTAAATCTTTTTGCAAAAGAGCAGCTTTC
ACCTGAATTTATAAAAATGAATCCTCAACATACTGTTCCAACTTTAGATGATAACGCTAT
TGCACAGTATTTAGTTGAAACTAGAGGTTCTAGTGACAGCCATCTTTACCCAAAAGATCC
TAAAGAACGTGCCTTAGTTAATCAACGTCTTTATTTTGATGCTGGTACTCTTTATCCAAG
AGTTCGTGCAATTGCATATCCAGTTTTGTTCTTAGGAGAAAAGAAAATCTCTGATGAAAA
GCGTAATCACATACTCGATGCATTTACTTATATGGAAAACTTTTTGGAAGGCAGAAAATG
GTTTTGTGGTGACCATTTGACAATTGCTGATCTGTCTTTGCTTGCGTCACTCTCATCAAT
TATTCATATTGGCGCATCACTTCATAATTATCCAAATCTTAGACGTTGGTATGAACAATG
TGCAGATATCAATGGTTATGAAGAAAATGATGAAGGAGCTAAAATTTTCGGTGAGAGGGT
TAAGAGTCTTCTTGATGACAAATTTTAAATGAATCTCCTAACAAGAAAATGAACAATAAA
AAGGCATGCAGTAAGAAATGTTAAATAATTTTCATTCTTTTTCAGTATTCGCACATAATT
TGAGAAAATTTGCATGCAAATGCTTTTGCCTAATGACTGTCACTGTTCGTGATGAAAAGA
CAAAGATTGTCGCTCAATGA
>g9134.t23 Gene=g9134 Length=211
MAPIVLYHFPPSAPSRVALLTIRNLNVDAEVKQVNLFAKEQLSPEFIKMNPQHTVPTLDD
NAIAQYLVETRGSSDSHLYPKDPKERALVNQRLYFDAGTLYPRVRAIAYPVLFLGEKKIS
DEKRNHILDAFTYMENFLEGRKWFCGDHLTIADLSLLASLSSIIHIGASLHNYPNLRRWY
EQCADINGYEENDEGAKIFGERVKSLLDDKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g9134.t23 | CDD | cd03177 | GST_C_Delta_Epsilon | 84 | 200 | 0.000 |
| 8 | g9134.t23 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 72 | 0.000 |
| 7 | g9134.t23 | Gene3D | G3DSA:1.20.1050.10 | - | 74 | 209 | 0.000 |
| 3 | g9134.t23 | PANTHER | PTHR43969:SF9 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 203 | 0.000 |
| 4 | g9134.t23 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 203 | 0.000 |
| 1 | g9134.t23 | Pfam | PF13417 | Glutathione S-transferase, N-terminal domain | 6 | 70 | 0.000 |
| 2 | g9134.t23 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 116 | 185 | 0.000 |
| 10 | g9134.t23 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 2 | 75 | 11.970 |
| 9 | g9134.t23 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 82 | 206 | 21.224 |
| 12 | g9134.t23 | SFLD | SFLDG01153 | Main.4: Theta-like | 4 | 206 | 0.000 |
| 13 | g9134.t23 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 4 | 206 | 0.000 |
| 5 | g9134.t23 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 4 | 86 | 0.000 |
| 6 | g9134.t23 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 75 | 195 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed