General information for g9134.t27
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase D5.
Parent gene
- The parent gene g9134 is located on chr_1: 384164..385196 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9134 | g9134.t27 | isoform | g9134.t27 | 382758 | 385196 |
| chr_1 | g9134 | g9134.t27 | exon | g9134.t27.exon1 | 382758 | 383241 |
| chr_1 | g9134 | g9134.t27 | cds | g9134.t27.CDS1 | 382930 | 383241 |
| chr_1 | g9134 | g9134.t27 | exon | g9134.t27.exon2 | 383855 | 383994 |
| chr_1 | g9134 | g9134.t27 | cds | g9134.t27.CDS2 | 383855 | 383994 |
| chr_1 | g9134 | g9134.t27 | exon | g9134.t27.exon3 | 384049 | 384072 |
| chr_1 | g9134 | g9134.t27 | cds | g9134.t27.CDS3 | 384049 | 384072 |
| chr_1 | g9134 | g9134.t27 | exon | g9134.t27.exon4 | 384140 | 384233 |
| chr_1 | g9134 | g9134.t27 | cds | g9134.t27.CDS4 | 384140 | 384233 |
| chr_1 | g9134 | g9134.t27 | exon | g9134.t27.exon5 | 384307 | 384409 |
| chr_1 | g9134 | g9134.t27 | cds | g9134.t27.CDS5 | 384307 | 384396 |
| chr_1 | g9134 | g9134.t27 | exon | g9134.t27.exon6 | 385127 | 385196 |
| chr_1 | g9134 | g9134.t27 | TSS | g9134.t27 | 385195 | 385195 |
| chr_1 | g9134 | g9134.t27 | TTS | g9134.t27 | NA | NA |
Sequences
>g9134.t27 Gene=g9134 Length=915
AGTTTGTTTTCCGACTGACAGCAATTAAGACTCTTTTTGTGGTCATTGCTTCAAAATAAA
TAAATTTTCGGAGAGCACTTAGCATGGCGCCAATCGTCCTTTATCACTTTCCACCGTCGG
CACCTTCAAGAGTCGCTCTGCTTACAATACGTAATCTAAATGTGGATGCTGAGGTCAAAC
AAGTAAATCTTTTTGCAAAAGAGCAGCTTTCACCTGAATTTATAAAAATGAATCCTCAAC
ATACTGTTCCAACTTTAGATGATAACGGATTTTATCTTTGGGAATCTCGTGCTATTGCAC
AGTATTTAGTTGAAACTAGAGGTTCTAGTGACAGCCATCTTTACCCAAAAGATCCTAAAG
AACGTGCCTTAGTTAATCAACGTCTTTATTTTGATGCTGGTACTCTTTATCCAAGAGTTC
GTGCAATTGCATATCCAGTTTTGTTCTTAGGAGAAAAGAAAATCTCTGATGAAAAGCGTA
ATCACATACTCGATGCATTTACTTATATGGAAAACTTTTTGGAAGGCAGAAAATGGTTTT
GTGGTGACCATTTGACAATTGCTGATCTGTCTTTGCTTGCGTCACTCTCATCAATTATTC
ATATTGGCGCATCACTTCATAATTATCCAAATCTTAGACGTTGGTATGAACAATGTGCAG
ATATCAATGGTTATGAAGAAAATGATGAAGGAGCTAAAATTTTCGGTGAGAGGGTTAAGA
GTCTTCTTGATGACAAATTTTAAATGAATCTCCTAACAAGAAAATGAACAATAAAAAGGC
ATGCAGTAAGAAATGTTAAATAATTTTCATTCTTTTTCAGTATTCGCACATAATTTGAGA
AAATTTGCATGCAAATGCTTTTGCCTAATGACTGTCACTGTTCGTGATGAAAAGACAAAG
ATTGTCGCTCAATGA
>g9134.t27 Gene=g9134 Length=219
MAPIVLYHFPPSAPSRVALLTIRNLNVDAEVKQVNLFAKEQLSPEFIKMNPQHTVPTLDD
NGFYLWESRAIAQYLVETRGSSDSHLYPKDPKERALVNQRLYFDAGTLYPRVRAIAYPVL
FLGEKKISDEKRNHILDAFTYMENFLEGRKWFCGDHLTIADLSLLASLSSIIHIGASLHN
YPNLRRWYEQCADINGYEENDEGAKIFGERVKSLLDDKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g9134.t27 | CDD | cd03045 | GST_N_Delta_Epsilon | 4 | 77 | 0.000 |
| 11 | g9134.t27 | CDD | cd03177 | GST_C_Delta_Epsilon | 92 | 208 | 0.000 |
| 8 | g9134.t27 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 79 | 0.000 |
| 7 | g9134.t27 | Gene3D | G3DSA:1.20.1050.10 | - | 82 | 217 | 0.000 |
| 3 | g9134.t27 | PANTHER | PTHR43969:SF9 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 211 | 0.000 |
| 4 | g9134.t27 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 211 | 0.000 |
| 1 | g9134.t27 | Pfam | PF13417 | Glutathione S-transferase, N-terminal domain | 6 | 80 | 0.000 |
| 2 | g9134.t27 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 124 | 193 | 0.000 |
| 10 | g9134.t27 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 2 | 83 | 21.058 |
| 9 | g9134.t27 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 90 | 214 | 21.224 |
| 13 | g9134.t27 | SFLD | SFLDG01153 | Main.4: Theta-like | 4 | 214 | 0.000 |
| 14 | g9134.t27 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 4 | 214 | 0.000 |
| 5 | g9134.t27 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 1 | 89 | 0.000 |
| 6 | g9134.t27 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 83 | 203 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
