General information for g9134.t50
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase 1-1.
Parent gene
- The parent gene g9134 is located on chr_1: 384164..385196 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9134 | g9134.t50 | isoform | g9134.t50 | 382758 | 385196 |
| chr_1 | g9134 | g9134.t50 | exon | g9134.t50.exon1 | 382758 | 383241 |
| chr_1 | g9134 | g9134.t50 | cds | g9134.t50.CDS1 | 383204 | 383241 |
| chr_1 | g9134 | g9134.t50 | exon | g9134.t50.exon2 | 383851 | 383994 |
| chr_1 | g9134 | g9134.t50 | cds | g9134.t50.CDS2 | 383851 | 383994 |
| chr_1 | g9134 | g9134.t50 | exon | g9134.t50.exon3 | 384049 | 384072 |
| chr_1 | g9134 | g9134.t50 | cds | g9134.t50.CDS3 | 384049 | 384072 |
| chr_1 | g9134 | g9134.t50 | exon | g9134.t50.exon4 | 384140 | 384233 |
| chr_1 | g9134 | g9134.t50 | cds | g9134.t50.CDS4 | 384140 | 384233 |
| chr_1 | g9134 | g9134.t50 | exon | g9134.t50.exon5 | 384307 | 384409 |
| chr_1 | g9134 | g9134.t50 | cds | g9134.t50.CDS5 | 384307 | 384396 |
| chr_1 | g9134 | g9134.t50 | exon | g9134.t50.exon6 | 385127 | 385196 |
| chr_1 | g9134 | g9134.t50 | TSS | g9134.t50 | 385195 | 385195 |
| chr_1 | g9134 | g9134.t50 | TTS | g9134.t50 | NA | NA |
Sequences
>g9134.t50 Gene=g9134 Length=919
AGTTTGTTTTCCGACTGACAGCAATTAAGACTCTTTTTGTGGTCATTGCTTCAAAATAAA
TAAATTTTCGGAGAGCACTTAGCATGGCGCCAATCGTCCTTTATCACTTTCCACCGTCGG
CACCTTCAAGAGTCGCTCTGCTTACAATACGTAATCTAAATGTGGATGCTGAGGTCAAAC
AAGTAAATCTTTTTGCAAAAGAGCAGCTTTCACCTGAATTTATAAAAATGAATCCTCAAC
ATACTGTTCCAACTTTAGATGATAACGGATTTTATCTTTGGGAATCTCGTGCTATTGCAC
AGTATTTAGTTGAAACTAGAGGTTCTAGTGACAGCCATCTTTACCCAAAAGATCCTAAAG
AACGTGCCTTAGTTAATCAACGTCTTTATTTTGATGCTGGTACTCTTTATCCAAGAGTTC
GTGCAATTGCAGTAATATCCAGTTTTGTTCTTAGGAGAAAAGAAAATCTCTGATGAAAAG
CGTAATCACATACTCGATGCATTTACTTATATGGAAAACTTTTTGGAAGGCAGAAAATGG
TTTTGTGGTGACCATTTGACAATTGCTGATCTGTCTTTGCTTGCGTCACTCTCATCAATT
ATTCATATTGGCGCATCACTTCATAATTATCCAAATCTTAGACGTTGGTATGAACAATGT
GCAGATATCAATGGTTATGAAGAAAATGATGAAGGAGCTAAAATTTTCGGTGAGAGGGTT
AAGAGTCTTCTTGATGACAAATTTTAAATGAATCTCCTAACAAGAAAATGAACAATAAAA
AGGCATGCAGTAAGAAATGTTAAATAATTTTCATTCTTTTTCAGTATTCGCACATAATTT
GAGAAAATTTGCATGCAAATGCTTTTGCCTAATGACTGTCACTGTTCGTGATGAAAAGAC
AAAGATTGTCGCTCAATGA
>g9134.t50 Gene=g9134 Length=129
MAPIVLYHFPPSAPSRVALLTIRNLNVDAEVKQVNLFAKEQLSPEFIKMNPQHTVPTLDD
NGFYLWESRAIAQYLVETRGSSDSHLYPKDPKERALVNQRLYFDAGTLYPRVRAIAVISS
FVLRRKENL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g9134.t50 | CDD | cd03045 | GST_N_Delta_Epsilon | 4 | 77 | 0.0000000 |
| 7 | g9134.t50 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 79 | 0.0000000 |
| 6 | g9134.t50 | Gene3D | G3DSA:1.20.1050.10 | - | 82 | 128 | 0.0000000 |
| 2 | g9134.t50 | PANTHER | PTHR43969:SF9 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 116 | 0.0000000 |
| 3 | g9134.t50 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 116 | 0.0000000 |
| 1 | g9134.t50 | Pfam | PF13417 | Glutathione S-transferase, N-terminal domain | 6 | 80 | 0.0000000 |
| 9 | g9134.t50 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 2 | 83 | 21.0580000 |
| 8 | g9134.t50 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 90 | 129 | 7.8630000 |
| 11 | g9134.t50 | SFLD | SFLDG00358 | Main (cytGST) | 5 | 118 | 0.0000000 |
| 12 | g9134.t50 | SFLD | SFLDS00019 | Glutathione Transferase (cytosolic) | 5 | 118 | 0.0000000 |
| 4 | g9134.t50 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 1 | 89 | 0.0000000 |
| 5 | g9134.t50 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 83 | 119 | 0.0000001 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
