Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase D2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9140 g9140.t5 TSS g9140.t5 407931 407931
chr_1 g9140 g9140.t5 isoform g9140.t5 407977 408771
chr_1 g9140 g9140.t5 exon g9140.t5.exon1 407977 408315
chr_1 g9140 g9140.t5 cds g9140.t5.CDS1 407977 408315
chr_1 g9140 g9140.t5 exon g9140.t5.exon2 408380 408557
chr_1 g9140 g9140.t5 cds g9140.t5.CDS2 408380 408557
chr_1 g9140 g9140.t5 exon g9140.t5.exon3 408610 408771
chr_1 g9140 g9140.t5 cds g9140.t5.CDS3 408610 408629
chr_1 g9140 g9140.t5 TTS g9140.t5 408830 408830

Sequences

>g9140.t5 Gene=g9140 Length=679
ATGGCTCCAATTATTTTATATCATTCACCAGCTTCGCCTTTCTCAAGGTCTGTACTTCTT
CTTATGAGATATTTGAAATTAGATGTCGAGGTCAAGGTTATGAATTTGATGGAAAAAGAA
CAGTTCACGCCAGAATTTCTCAAAATCAATCCACAACATTGTGTACCAACAATCGATGAT
GATGGATTTTACTTGTGGGAATCGAGAGCTATTTTGGCTTATTTGCTCGAATCGAAAGCA
CCCGAACTCGTGCCAACATCACCAAAAGAAAAAGCAATTGTAAATCAACGTCTTCATTAT
GAGTTAGGCGGATTCACTAATAAATTTATTCAGCTTGTGGTACCAATATTTTCTGGCCAA
CGAGAAGAAGTTAATCCTGATACAGTGAAGGAACTTCATGAAATTCTTTTCACCATTGAT
GAGCATTATTTTCCTAATGGTAATGAATGGATTGCAGGTGAAGTTATTACCACAGCAGAT
TTTGCTTATGTTGCTACAGTTTCAACTTTAGTTGTAAGCACTTGGATTGTCACTTGAAAA
ATATCCAAGATTGGATGGATGGTTAAAGCGATGCACAGCAGTAATGACAGATTATGAAGA
AGCTAATGAGAAAGGAATTGAAATATTTAAACAATTTTATATAACAAAATATCCTAAAGC
ATTTGAGAATTTTCATTAA

>g9140.t5 Gene=g9140 Length=178
MAPIILYHSPASPFSRSVLLLMRYLKLDVEVKVMNLMEKEQFTPEFLKINPQHCVPTIDD
DGFYLWESRAILAYLLESKAPELVPTSPKEKAIVNQRLHYELGGFTNKFIQLVVPIFSGQ
REEVNPDTVKELHEILFTIDEHYFPNGNEWIAGEVITTADFAYVATVSTLVVSTWIVT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g9140.t5 CDD cd03045 GST_N_Delta_Epsilon 4 77 0.000
7 g9140.t5 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 77 0.000
6 g9140.t5 Gene3D G3DSA:1.20.1050.10 - 78 176 0.000
2 g9140.t5 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 171 0.000
3 g9140.t5 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 1 171 0.000
1 g9140.t5 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 78 0.000
8 g9140.t5 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 83 19.859
10 g9140.t5 SFLD SFLDG00358 Main (cytGST) 5 170 0.000
11 g9140.t5 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 5 170 0.000
4 g9140.t5 SUPERFAMILY SSF52833 Thioredoxin-like 1 78 0.000
5 g9140.t5 SUPERFAMILY SSF47616 GST C-terminal domain-like 81 171 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed