Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g915 g915.t1 TTS g915.t1 6831658 6831658
chr_3 g915 g915.t1 isoform g915.t1 6831939 6834230
chr_3 g915 g915.t1 exon g915.t1.exon1 6831939 6834230
chr_3 g915 g915.t1 cds g915.t1.CDS1 6831939 6834230
chr_3 g915 g915.t1 TSS g915.t1 6834266 6834266

Sequences

>g915.t1 Gene=g915 Length=2292
ATGAGCAGAATTTATAATCTAAATAAACCAAGTACAGTTCCAAAGAGACAAATCTCTGGC
GAAATAAGACAACAAGTACAATGTGAATATTACAATCTTTTATGGATTTATCATGGCTCT
GTTTATTCATGCAAAGTCAGAAATCAAACAATTAATAAAAATTCAAATCTTGAATTTATT
GGACATCATCAAGAGTTCTTCACAAATGATGACGTCATTGGAGTTAGCTTCGAAAATTGT
TCTATTTCTCAAGTACCTCAAGGATTGATGAAAACTTTTCCTAATTTAAAACATCTTGAG
ATTTACAATTCAGAATTAACACAAGTCACTTACGATATGATGAAAGAATATGTAAAATTA
ACAAACCTTGTTCTTGTGCTAAACAAAATTCCATTCATTTGCAGTGACATGTTGGAAAAT
TTAAGAAATTTGGAAGTTTTTTCATTGAATCATACAAAAGTAAATTTAATTGAACCAAAT
ATTTTTGATAAATTGCCAAATTTAAAACATGTCGATTTTATGGGAACAGACTACATCAAC
AAATGCTTTAGCTTCACTGAATCAGGCTTAGGCAATGCAACACTCGAAGAAATCAAAAGA
GACTTGCATGATCGTTATTCACCATGGCGGAAAGTCATTGAAAAGTATAAACTTGAAAAA
ATCAATGATGACAGCAGAATAAAAACAGAACTCGATAAAGCACAAAGTGTAAGACTCAGT
TTGACACAACAAGTCGGAAGTTTAACTGAAAAAACATCGCAAAAAGAGAGAGAACTTAAT
GAAGCATTAAAAAAGTTGGCAGAATCGGAAAAGGAGGTCAATAACTTGAAGGTCTTGAAA
ATTCAAAGTCAAGTTGAATGTGAAGCTTTAAAGAAAAAAGTTACAGAAGTTGAAAATGAA
AAAATTAGAATGGTACAAGAGATGAGAGTTAAAAGTGAAAGAGAAATTCAAGAACTAAAG
AGAAAATTGATTGGAATTGATGCCGAAAATAAAGTGAAAAACAATGAAAATCATACAGCA
AAGTTAGAAATTAATGTGCTAAGACAACAAGTCATGGATATTAGTAATGAAAATAAAACA
TTAAAAGATGAAAAATTCAAAATCAAGAAAGAAGCTGATGCTTTAAGGCAACAAATTCAT
GACACAATCAATGATAAAAATTTGAAACTTCAGGAGCAAAAACTACAAAGTGATAGAGAA
ATTGAAATTTTGAAAATAAAACTTTCTGAAATTGACCGTGAAAGTAGGAGCTTGGATGAT
GATAAAATGAAGGCCAAATTAGAAGCTGACAATTTAAAATGGAAAATTCATAAAATTGAG
AATGAAAATGATCAATTAAAGCAGAAATTGTTGCTGAATTTGAAAGAAATTGATGACTTT
AAACAGACAATCATAAAAATCAGTGATGAAAAAACAAAGGTCACAGAAGAACTCAATTTG
TTGAACATTCAATATCAGCAAAAAATGCAAAACACTGACATGATTGATTTGGAGCAAAAA
TTGTCAATGCAAATGCGATTGACAGAAGCAGCAAAAATGAAAGAGCTTGAACAGCAGAAA
AACATGATTGCAGCCTTAAACCAAAGAATTTTCATTCTCGAGAATGAAAATCAAATGTTG
AAGCAAGAAAATGCACAAAATAATCAGAAAATCAATAATTTAAAGTTAAAAGTTACGGAA
ACTGCTGACGATATGAGTTACGAAAATATCAAATTGAAGCATGAAGCTGTAATTTTTGGT
GATTTTAAAACAGTCATGGACGATAATGATTTTAAAGATTTCACAATTAAAACTGAATAT
GAAGAATTTAAAGCTCACAAATTTGTCTTAGCTGCTCGCAGTCCAATTTTTGCAAGAGTT
TTTAAAGACAACATTCATGCTGAATGTTTGAACCTTCTTGATATATCGACAAAAATTTTC
CGAGAAATTCTTCACTTTATTTACACTGATGATTTTCCACAATCAACAGAAATTGACTAC
ATTGAACTTTTTAAAGCAAGTGAGCGATTAAAGATTGAAAAGTTGAAAATGTTTTCAGTT
AAAAAACTTATTAACAAAATAACATCCGAAAATGCCTTCGAAATTCTCATTTTGAGCAAT
AAATATGGTTACGATGAATTGCGACAAAAGGCATTTGAGGAAATTAAAAAGTATTTTGAT
AACGAGCAAATTGATGACGCTTTAGCAACGCAACCTGATAAGCTTAAAAGACTTGTGGAA
ATTAAAAGGATGAAGAATGAGTTGATGAAGGAGTTGGAAAATGAATTCACTTCTGTTCTT
AAACAAAATTGA

>g915.t1 Gene=g915 Length=763
MSRIYNLNKPSTVPKRQISGEIRQQVQCEYYNLLWIYHGSVYSCKVRNQTINKNSNLEFI
GHHQEFFTNDDVIGVSFENCSISQVPQGLMKTFPNLKHLEIYNSELTQVTYDMMKEYVKL
TNLVLVLNKIPFICSDMLENLRNLEVFSLNHTKVNLIEPNIFDKLPNLKHVDFMGTDYIN
KCFSFTESGLGNATLEEIKRDLHDRYSPWRKVIEKYKLEKINDDSRIKTELDKAQSVRLS
LTQQVGSLTEKTSQKERELNEALKKLAESEKEVNNLKVLKIQSQVECEALKKKVTEVENE
KIRMVQEMRVKSEREIQELKRKLIGIDAENKVKNNENHTAKLEINVLRQQVMDISNENKT
LKDEKFKIKKEADALRQQIHDTINDKNLKLQEQKLQSDREIEILKIKLSEIDRESRSLDD
DKMKAKLEADNLKWKIHKIENENDQLKQKLLLNLKEIDDFKQTIIKISDEKTKVTEELNL
LNIQYQQKMQNTDMIDLEQKLSMQMRLTEAAKMKELEQQKNMIAALNQRIFILENENQML
KQENAQNNQKINNLKLKVTETADDMSYENIKLKHEAVIFGDFKTVMDDNDFKDFTIKTEY
EEFKAHKFVLAARSPIFARVFKDNIHAECLNLLDISTKIFREILHFIYTDDFPQSTEIDY
IELFKASERLKIEKLKMFSVKKLINKITSENAFEILILSNKYGYDELRQKAFEEIKKYFD
NEQIDDALATQPDKLKRLVEIKRMKNELMKELENEFTSVLKQN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g915.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 593 670 2.56409E-18
10 g915.t1 Coils Coil Coil 252 336 -
11 g915.t1 Coils Coil Coil 344 378 -
9 g915.t1 Coils Coil Coil 422 456 -
13 g915.t1 Coils Coil Coil 509 557 -
12 g915.t1 Coils Coil Coil 735 755 -
7 g915.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 35 198 5.1E-18
8 g915.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 579 722 7.8E-30
3 g915.t1 PANTHER PTHR24413:SF213 FI01029P-RELATED 438 749 7.8E-22
4 g915.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 438 749 7.8E-22
1 g915.t1 Pfam PF13855 Leucine rich repeat 119 172 1.1E-7
2 g915.t1 Pfam PF00651 BTB/POZ domain 583 685 1.8E-18
16 g915.t1 ProSiteProfiles PS50097 BTB domain profile. 592 656 16.569
15 g915.t1 SMART SM00225 BTB_4 592 687 5.9E-15
5 g915.t1 SUPERFAMILY SSF52058 L domain-like 66 179 2.21E-15
6 g915.t1 SUPERFAMILY SSF54695 POZ domain 576 687 1.2E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed