Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ubiquitin-conjugating enzyme E2 G1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g9156 g9156.t14 TTS g9156.t14 528549 528549
chr_1 g9156 g9156.t14 isoform g9156.t14 528625 530131
chr_1 g9156 g9156.t14 exon g9156.t14.exon1 528625 528860
chr_1 g9156 g9156.t14 cds g9156.t14.CDS1 528625 528860
chr_1 g9156 g9156.t14 exon g9156.t14.exon2 528921 529042
chr_1 g9156 g9156.t14 cds g9156.t14.CDS2 528921 529042
chr_1 g9156 g9156.t14 exon g9156.t14.exon3 529297 529365
chr_1 g9156 g9156.t14 cds g9156.t14.CDS3 529297 529325
chr_1 g9156 g9156.t14 exon g9156.t14.exon4 529499 529652
chr_1 g9156 g9156.t14 exon g9156.t14.exon5 529733 530131
chr_1 g9156 g9156.t14 TSS g9156.t14 NA NA

Sequences

>g9156.t14 Gene=g9156 Length=980
TGTTGTTTATTTTTTGAAAAAAAAAACTGAAGGAAACGAGTCTTAACAAAAAATAATTTG
AATTTCATTTTGACAGGTATAACATGCATAAAATGTCTAAAATACTGAACTTTTTTAATT
TCAAAAACCTTTGTCGACTGTCGTCATAAGAGCCTGTCTCATTGTCGACTGAAGTAAAAA
CATTTGTAAAAATCGAGAAAACTAATTCACCTTCAAAATCCAAATTTTTAAGTGTTCTCA
TCTTTTTAAATCGTTTCAATACCTAAATTCTTAAAGTCTATGCAGTAATTTATTGATATT
TGCTAAAATTTGAAGAGAAAGAGTTCATAAATTCGATTTTTCGTAGTTCAAAAATTTTCA
TTGTTCTTGAAGAAGAAAAGAAAAAAAGTGTAGAAAGAGATACACTTCTGCCTTTTAGCA
GTACTATAAATTAGCACCAAATTGCTCGAGAGTACATTTTGGAAAGACTAAATTAAATTC
TTTTTGATGGACACAACTGCATCACTTCTTTTAAAAAAGCAATTAGCAGAGCTCAATAAG
CACCCAGTAGAAGGTTTCTCGGCAGGACTTGTTGATGACAATGATATTTTCAAATGGGAA
GTGCTGATAATTGGTCCTCCAGATGTATTGATTGTCATCTTATTACAGCTCATCTTTACT
TCCCTAAAGAATATCCACTAAGACCTCCTCGCATGCGTTTTGTTACAGAAATTTGGCATC
CAAATATTGATCAAAATGGAGATGTCTGCATTAGTATCTTGCATGAACCTGGTGATGACA
AATGGGGATATGAAAAAGCTTCAGAACGTTGGCTTCCGGTACACACAGTTGAGACAATTA
TTATTTCAGTTATTTCAATGTTAGCCGAACCGAATGATGAGTCACCTGCTAATGTAGATG
CAGCAAAGCAATGGCGAGAAGCTTATCCGGAATTTAAGCGAAGAGTAGCTCGTTGTGTCC
GTAAAAGTCAAGAGGAGTAA

>g9156.t14 Gene=g9156 Length=128
MGSADNWSSRCIDCHLITAHLYFPKEYPLRPPRMRFVTEIWHPNIDQNGDVCISILHEPG
DDKWGYEKASERWLPVHTVETIIISVISMLAEPNDESPANVDAAKQWREAYPEFKRRVAR
CVRKSQEE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g9156.t14 CDD cd00195 UBCc 16 122 3.39518E-41
5 g9156.t14 Gene3D G3DSA:3.10.110.10 Ubiquitin Conjugating Enzyme 14 128 2.8E-47
2 g9156.t14 PANTHER PTHR24067:SF258 UBIQUITIN-CONJUGATING ENZYME E2G 1A (UBC7 HOMOLOG, YEAST) 16 127 1.9E-56
3 g9156.t14 PANTHER PTHR24067 UBIQUITIN-CONJUGATING ENZYME E2 16 127 1.9E-56
1 g9156.t14 Pfam PF00179 Ubiquitin-conjugating enzyme 18 121 6.8E-34
7 g9156.t14 ProSitePatterns PS00183 Ubiquitin-conjugating enzymes active site. 41 56 -
9 g9156.t14 ProSiteProfiles PS50127 Ubiquitin-conjugating enzymes family profile. 21 116 27.342
8 g9156.t14 SMART SM00212 ubc_7 1 127 3.1E-29
4 g9156.t14 SUPERFAMILY SSF54495 UBC-like 18 125 2.75E-38

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed