Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g916 g916.t1 TSS g916.t1 6842624 6842624
chr_3 g916 g916.t1 isoform g916.t1 6842884 6843945
chr_3 g916 g916.t1 exon g916.t1.exon1 6842884 6843945
chr_3 g916 g916.t1 cds g916.t1.CDS1 6842884 6843945
chr_3 g916 g916.t1 TTS g916.t1 6844139 6844139

Sequences

>g916.t1 Gene=g916 Length=1062
ATGAAACAACAAATTAATTGTCAAATGAAACATGATAGATATCCATTCTACAAAAATTCT
AAATGGATTTACACATGTTATATTGAAAATCAAAAAATTAACGCTAACGCAGAAATAGAA
ATGATTGGATTGCATAAGCAAGGATTATTGAATAAAAATGTCTTTATAGTAATTTTGGAA
AATTGCAAATTATCAAGAATTCCACAAGGATTAAAATCTATTTTTCCAAACATGGAAGTA
CTTCAAATAGTTAAATCAAATTTGCCACATATTGATCGCAAAGACCTTAAAGAATATGAG
ACATTGAAGCAATTTTACTTCTGTTTTAATCCAATACGCTTTCTGCTAGATGATTTATTA
TTGGATATGAAGTCATTAGAATTCTTTACTGTCAGAGGAAGTATGTTAGAATTTGTTGAA
CCAAATATTTTAAATGGTTTATCAAAACTCAAATATGCTAATTTTAATGAATGTGGTTTT
ATGAATTTACGATTTAATTCTATACAACCAGAAGCTAATGACGTTTCATTGGAAGAACTG
AAAGATGAACTTCATTCAAAATATGAAGATTACGTACGAAAGAAAATGCTTGATAATAAA
CAACAACAAATGTTAAATGATTTTGAATTTATCTTCAATCTCAAGCGAGTAATGCAAAAT
GAAAATTTCAAAGATTTCAAAGTCGTAGTTGGTTTAGAAGAATTCAAAGTACACAAGTTT
GTTTTGGCAGCTTGCAGTCCAGTTTTTGCTGAAATGATTGAAAATAACACTGAAGCAGAA
AGTTTGAAGCTTGTCGATATTCCTCCTGAAATTTTTTGTGTAATCTACAATTACATCTAT
TTGAAAAAATTTCCAAATCCAAGAAACTGCAATCTTATTCATTTGTTGGTTGCATGTAAA
AGATTGAAAATAAAAAAATTGGCAGAATTTGCAGCTAAAGAACTTGAAAATGTCATCAAT
CTTGAAAATGCTATTGAGCTTTTAGCATTAGGCAATAAATATGGATATGAGGATCTCAAG
AGAAAATCATTTGTAAAGGTTAAGGAAATTTTTGAAAAATAA

>g916.t1 Gene=g916 Length=353
MKQQINCQMKHDRYPFYKNSKWIYTCYIENQKINANAEIEMIGLHKQGLLNKNVFIVILE
NCKLSRIPQGLKSIFPNMEVLQIVKSNLPHIDRKDLKEYETLKQFYFCFNPIRFLLDDLL
LDMKSLEFFTVRGSMLEFVEPNILNGLSKLKYANFNECGFMNLRFNSIQPEANDVSLEEL
KDELHSKYEDYVRKKMLDNKQQQMLNDFEFIFNLKRVMQNENFKDFKVVVGLEEFKVHKF
VLAACSPVFAEMIENNTEAESLKLVDIPPEIFCVIYNYIYLKKFPNPRNCNLIHLLVACK
RLKIKKLAEFAAKELENVINLENAIELLALGNKYGYEDLKRKSFVKVKEIFEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g916.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 225 302 0.000
7 g916.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 23 186 0.000
8 g916.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 187 347 0.000
2 g916.t1 PANTHER PTHR24413:SF213 FI01029P-RELATED 185 342 0.000
3 g916.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 185 342 0.000
1 g916.t1 Pfam PF00651 BTB/POZ domain 214 316 0.000
9 g916.t1 ProSiteProfiles PS50097 BTB domain profile. 224 288 14.915
6 g916.t1 SMART SM00225 BTB_4 224 319 0.000
4 g916.t1 SUPERFAMILY SSF52058 L domain-like 52 163 0.000
5 g916.t1 SUPERFAMILY SSF54695 POZ domain 214 317 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values