General information for g9162.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Long-chain fatty acid transport protein 1.
Parent gene
- The parent gene g9162 is located on chr_1: 555700..556111 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9162 | g9162.t1 | TTS | g9162.t1 | 549762 | 549762 |
| chr_1 | g9162 | g9162.t1 | isoform | g9162.t1 | 550081 | 555700 |
| chr_1 | g9162 | g9162.t1 | exon | g9162.t1.exon1 | 550081 | 550856 |
| chr_1 | g9162 | g9162.t1 | cds | g9162.t1.CDS1 | 550081 | 550856 |
| chr_1 | g9162 | g9162.t1 | exon | g9162.t1.exon2 | 550916 | 551081 |
| chr_1 | g9162 | g9162.t1 | cds | g9162.t1.CDS2 | 550916 | 551081 |
| chr_1 | g9162 | g9162.t1 | exon | g9162.t1.exon3 | 551143 | 551470 |
| chr_1 | g9162 | g9162.t1 | cds | g9162.t1.CDS3 | 551143 | 551470 |
| chr_1 | g9162 | g9162.t1 | exon | g9162.t1.exon4 | 551545 | 551581 |
| chr_1 | g9162 | g9162.t1 | cds | g9162.t1.CDS4 | 551545 | 551581 |
| chr_1 | g9162 | g9162.t1 | exon | g9162.t1.exon5 | 551640 | 551877 |
| chr_1 | g9162 | g9162.t1 | cds | g9162.t1.CDS5 | 551640 | 551877 |
| chr_1 | g9162 | g9162.t1 | exon | g9162.t1.exon6 | 551959 | 552109 |
| chr_1 | g9162 | g9162.t1 | cds | g9162.t1.CDS6 | 551959 | 552109 |
| chr_1 | g9162 | g9162.t1 | exon | g9162.t1.exon7 | 552851 | 553203 |
| chr_1 | g9162 | g9162.t1 | cds | g9162.t1.CDS7 | 552851 | 553203 |
| chr_1 | g9162 | g9162.t1 | exon | g9162.t1.exon8 | 555680 | 555700 |
| chr_1 | g9162 | g9162.t1 | cds | g9162.t1.CDS8 | 555680 | 555700 |
| chr_1 | g9162 | g9162.t1 | TSS | g9162.t1 | 556111 | 556111 |
Sequences
>g9162.t1 Gene=g9162 Length=2070
ATGAAAAATGTTAATGGACAGAGTGATGATGTTGAGAAAGGTTTGAAACAACAATACATA
CAAAACTCAACTTATAACAACAATGAGAATGAAGCAAAGACAGCAAGTACAAACGAGTTG
TTGAATGTTGAATCCAATAGTCCAAGCAACAGTAAGAGCAACAGCAGCAGTAATAATTCA
GTTAACTTTCAACTTGCTCTGAGGATAGTTGGCTCGCTTGCTGTTATAATATTGGCCTCA
ATATTAATTTATTTCATGGATAATTTTATTTACTGGATTATTACAATATGTGTTGCATTA
GTAACATTATTGTTTATTACTGGAATATATCGATGGCTTTATATTGCACTTATCACTGGA
CCTCGCGATTTAATTGCTGTGACGAGATTTATTCGATTACTACTGTTCATTAGAAAACTC
GGTAATAAAAACATTTCTGCTGCTGAGTTGTTTGAACAACAAGTCGAAAAATATCCCAAT
AAAGCTTGTTTAGTGTTTGAAGATCGAAGCTGGAGTTTCAAAGAGATCAATGACTTGAAA
AATCGTATAGCAAACGTCTTTTTACAACATGGCTTCAAGCATGGTGATAAAGTTGGTTTA
CTGATGGAAAATAGACCTGAATTCGTTGCAATATGGCTAGGATTGTCAAAAATAGGAATT
GTTATTCCATTAATTAATTGCAATTTGAAAAAGCAATCACTTTTACATTCCATTACAATT
GGTGACTGCAAAGCTTTAATTTTTGGTGAATCATTGACTGAATCCGTTTCTGAGATAAAA
AACAATTGCCATCAAATATTTCAAGTTCCACGTGATCCACCATCGGCTTCAACATATAAA
AAACCAGGACATCATGATCAACTTGTGTTTATATATACAAGTGGCACAACCGGCCTGCCA
AAAGCAGCAGTCATTTCGCATAATCGATATATTTACATTGCTGCAGCTATTCACATTGTT
GCTGATTTCAAAGATAATGACGTTTATTATAGTCCTTTACCACTTTATCATACTGCTTGC
GGTTGTATGAGTGTGGGGCAAATGATAATCTTTGGCTCAACCGTTGTCTTGCGTAAAAAA
TTCTCGGCTTCAGCATACTTTTCTGATTGTGCCAAATACAAAGCAACAGTCGCTCAATAT
ATTGGAGAAATGTGTCGCTATTGCCTTTCAACACCTGGTCAACAAACTGATACAAGTCAT
AATTTACGTCTAATTTTCGGAAATGGCTTGCGTCCTCAAATTTGGCCACAATTTGTTAAA
CGTTTCAATATACCTCGTGTAGCTGAATTTTATGGAGCAACGGAAGGAAATGCTAATATT
GTTAATGTTGACAATACAGTTGGTGCAATTGGTTTTGTATCTAGAATTTTACCACAAGTT
TATCCAATTTCAATTATAAAAGCTGATCCAGAAACAGGAGAACCAATTAGAAATAGTAAA
GGATTATGTCAAGCATGCAAACCAAATGAACCTGGTGTTTTTATCGGCAAAATCACAGCA
AATCCATCAAGATCCTTCTTAGGATATGTCGATAAAAAAGCTTCTGAAAAGAAAGTCATT
CGTGATGTTTTCCGTAAAGGTGATTCAGCTTTTCTTAGTGGTGATATTTTAATAGCTGAT
GAGAAAGGAAATTTATTCTTTGTTGATCGAACTGGTGACACATTCAGATGGAAAGGTGAA
AATTGTTCTACAAGTGAAATTGAAGCACAAGTTAGTAATGAAGCTGGATATAGAGATTGT
GTAGTTTATGGAGTAGAAATTCCTCAAGTTGAAGGTCGTGCAGGAATGGCAGCAATTGTT
GATCCAGAAAGCACTTTAGATCTTCGAGAATTAGGTGAAAATTTGAAAAAATGTCTGCCA
TCTTATGCACGTCCACAATTTATTAGAATATTGGAGAGAATTGACATGACAGGCACATGT
AAGCTAAAGAAAGTCGATTTACAAAAAGATGGATTTAATCCAAATTTAATATCAGATAGA
CTTTTCTTCCTTAATTTAAAATCAAGCAATTATGAGCCGCTTACAGCTGAAATTTATGAG
AAAATTCTCTCACAAGAGATTCGTTTTTAA
>g9162.t1 Gene=g9162 Length=689
MKNVNGQSDDVEKGLKQQYIQNSTYNNNENEAKTASTNELLNVESNSPSNSKSNSSSNNS
VNFQLALRIVGSLAVIILASILIYFMDNFIYWIITICVALVTLLFITGIYRWLYIALITG
PRDLIAVTRFIRLLLFIRKLGNKNISAAELFEQQVEKYPNKACLVFEDRSWSFKEINDLK
NRIANVFLQHGFKHGDKVGLLMENRPEFVAIWLGLSKIGIVIPLINCNLKKQSLLHSITI
GDCKALIFGESLTESVSEIKNNCHQIFQVPRDPPSASTYKKPGHHDQLVFIYTSGTTGLP
KAAVISHNRYIYIAAAIHIVADFKDNDVYYSPLPLYHTACGCMSVGQMIIFGSTVVLRKK
FSASAYFSDCAKYKATVAQYIGEMCRYCLSTPGQQTDTSHNLRLIFGNGLRPQIWPQFVK
RFNIPRVAEFYGATEGNANIVNVDNTVGAIGFVSRILPQVYPISIIKADPETGEPIRNSK
GLCQACKPNEPGVFIGKITANPSRSFLGYVDKKASEKKVIRDVFRKGDSAFLSGDILIAD
EKGNLFFVDRTGDTFRWKGENCSTSEIEAQVSNEAGYRDCVVYGVEIPQVEGRAGMAAIV
DPESTLDLRELGENLKKCLPSYARPQFIRILERIDMTGTCKLKKVDLQKDGFNPNLISDR
LFFLNLKSSNYEPLTAEIYEKILSQEIRF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g9162.t1 | Gene3D | G3DSA:3.40.50.12780 | - | 136 | 550 | 2.5E-72 |
| 12 | g9162.t1 | Gene3D | G3DSA:3.30.300.30 | - | 553 | 653 | 5.7E-13 |
| 4 | g9162.t1 | PANTHER | PTHR43107:SF21 | FATTY ACID (LONG CHAIN) TRANSPORT PROTEIN, ISOFORM F-RELATED | 55 | 263 | 0.0 |
| 6 | g9162.t1 | PANTHER | PTHR43107 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN | 55 | 263 | 0.0 |
| 3 | g9162.t1 | PANTHER | PTHR43107:SF21 | FATTY ACID (LONG CHAIN) TRANSPORT PROTEIN, ISOFORM F-RELATED | 276 | 689 | 0.0 |
| 5 | g9162.t1 | PANTHER | PTHR43107 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN | 276 | 689 | 0.0 |
| 2 | g9162.t1 | Pfam | PF00501 | AMP-binding enzyme | 151 | 557 | 1.8E-68 |
| 1 | g9162.t1 | Pfam | PF13193 | AMP-binding enzyme C-terminal domain | 566 | 639 | 1.5E-7 |
| 14 | g9162.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 64 | - |
| 18 | g9162.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 85 | - |
| 16 | g9162.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 86 | 90 | - |
| 19 | g9162.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 91 | 113 | - |
| 13 | g9162.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 114 | 207 | - |
| 17 | g9162.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 208 | 225 | - |
| 15 | g9162.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 226 | 689 | - |
| 10 | g9162.t1 | ProSitePatterns | PS00455 | Putative AMP-binding domain signature. | 290 | 301 | - |
| 9 | g9162.t1 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 141 | 653 | 2.75E-101 |
| 8 | g9162.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 63 | 85 | - |
| 7 | g9162.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 92 | 114 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K08745 (solute carrier family 27 (fatty acid transporter), member 1/4 [EC:6.2.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
