General information for g9162.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Long-chain fatty acid transport protein 4.
Parent gene
- The parent gene g9162 is located on chr_1: 555700..556111 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9162 | g9162.t4 | isoform | g9162.t4 | 550849 | 553203 |
| chr_1 | g9162 | g9162.t4 | exon | g9162.t4.exon1 | 550849 | 550856 |
| chr_1 | g9162 | g9162.t4 | exon | g9162.t4.exon2 | 550916 | 551081 |
| chr_1 | g9162 | g9162.t4 | exon | g9162.t4.exon3 | 551143 | 551581 |
| chr_1 | g9162 | g9162.t4 | cds | g9162.t4.CDS1 | 551517 | 551581 |
| chr_1 | g9162 | g9162.t4 | exon | g9162.t4.exon4 | 551640 | 551877 |
| chr_1 | g9162 | g9162.t4 | cds | g9162.t4.CDS2 | 551640 | 551877 |
| chr_1 | g9162 | g9162.t4 | exon | g9162.t4.exon5 | 551959 | 552109 |
| chr_1 | g9162 | g9162.t4 | cds | g9162.t4.CDS3 | 551959 | 552109 |
| chr_1 | g9162 | g9162.t4 | exon | g9162.t4.exon6 | 552851 | 553203 |
| chr_1 | g9162 | g9162.t4 | cds | g9162.t4.CDS4 | 552851 | 552969 |
| chr_1 | g9162 | g9162.t4 | TSS | g9162.t4 | NA | NA |
| chr_1 | g9162 | g9162.t4 | TTS | g9162.t4 | NA | NA |
Sequences
>g9162.t4 Gene=g9162 Length=1355
AGTGATGATGTTGAGAAAGGTTTGAAACAACAATACATACAAAACTCAACTTATAACAAC
AATGAGAATGAAGCAAAGACAGCAAGTACAAACGAGTTGTTGAATGTTGAATCCAATAGT
CCAAGCAACAGTAAGAGCAACAGCAGCAGTAATAATTCAGTTAACTTTCAACTTGCTCTG
AGGATAGTTGGCTCGCTTGCTGTTATAATATTGGCCTCAATATTAATTTATTTCATGGAT
AATTTTATTTACTGGATTATTACAATATGTGTTGCATTAGTAACATTATTGTTTATTACT
GGAATATATCGATGGCTTTATATTGCACTTATCACTGGACCTCGCGATTTAATTGCTGTG
ACGAGATTTATTCGATTACTACTGTTCATTAGAAAACTCGGTAATAAAAACATTTCTGCT
GCTGAGTTGTTTGAACAACAAGTCGAAAAATATCCCAATAAAGCTTGTTTAGTGTTTGAA
GATCGAAGCTGGAGTTTCAAAGAGATCAATGACTTGAAAAATCGTATAGCAAACGTCTTT
TTACAACATGGCTTCAAGCATGGTGATAAAGTTGGTTTACTGATGGAAAATAGACCTGAA
TTCGTTGCAATATGGCTAGGATTGTCAAAAATAGGAATTGTTATTCCATTAATTAATTGC
AATTTGAAAAAGCAATCACTTTTACATTCCATTACAATTGGTGACTGCAAAGCTTTAATT
TTTGGTGAATCATTGACTGAATCCGTTTCTGAGATAAAAAACAATTGCCATCAAATATTG
TTCTTTATCAATTCAATGATGACATAAACTTGCCAGTTTTTCAAAATTCAAAAGACTTGC
AGACTTTATGTAGTCAAGTTCCACGTGATCCACCATCGGCTTCAACATATAAAAAACCAG
GACATCATGATCAACTTGTGTTTATATATACAAGTGGCACAACCGGCCTGCCAAAAGCAG
CAGTCATTTCGCATAATCGATATATTTACATTGCTGCAGCTATTCACATTGTTGCTGATT
TCAAAGATAATGACGTTTATTATAGTCCTTTACCACTTTATCATACTGCTTGCGGTTGTA
TGAGTGTGGGGCAAATGATAATCTTTGGCTCAACCGTTGTCTTGCGTAAAAAATTCTCGG
CTTCAGCATACTTTTCTGATTGTGCCAAATACAAAGCAACAGTCGCTCAATATATTGGAG
AAATGTGTCGCTATTGCCTTTCAACACCTGGTCAACAAACTGATACAAGTCATAATTTAC
GTCTAATTTTCGGAAATGGCTTGCGTCCTCAAATTTGGCCACAATTTGTTAAACGTTTCA
ATATACCTCGTGTAGCTGAATTTTATGGAGCAACG
>g9162.t4 Gene=g9162 Length=190
MDNFIYWIITICVALVTLLFITGIYRWLYIALITGPRDLIAVTRFIRLLLFIRKLGNKNI
SAAELFEQQVEKYPNKACLVFEDRSWSFKEINDLKNRIANVFLQHGFKHGDKVGLLMENR
PEFVAIWLGLSKIGIVIPLINCNLKKQSLLHSITIGDCKALIFGESLTESVSEIKNNCHQ
ILFFINSMMT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g9162.t4 | Gene3D | G3DSA:3.40.50.12780 | - | 50 | 188 | 5.5E-27 |
| 2 | g9162.t4 | PANTHER | PTHR43107:SF21 | FATTY ACID (LONG CHAIN) TRANSPORT PROTEIN, ISOFORM F-RELATED | 3 | 179 | 1.0E-67 |
| 3 | g9162.t4 | PANTHER | PTHR43107 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN | 3 | 179 | 1.0E-67 |
| 1 | g9162.t4 | Pfam | PF00501 | AMP-binding enzyme | 66 | 173 | 6.1E-22 |
| 8 | g9162.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 9 | g9162.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 28 | - |
| 7 | g9162.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 29 | 190 | - |
| 5 | g9162.t4 | SUPERFAMILY | SSF56801 | Acetyl-CoA synthetase-like | 41 | 179 | 3.14E-28 |
| 4 | g9162.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
