General information for g9162.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9162 is located on chr_1: 555700..556111 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9162 | g9162.t5 | TTS | g9162.t5 | 551434 | 551434 |
| chr_1 | g9162 | g9162.t5 | isoform | g9162.t5 | 551959 | 556111 |
| chr_1 | g9162 | g9162.t5 | exon | g9162.t5.exon1 | 551959 | 552109 |
| chr_1 | g9162 | g9162.t5 | cds | g9162.t5.CDS1 | 551959 | 552109 |
| chr_1 | g9162 | g9162.t5 | exon | g9162.t5.exon2 | 552851 | 553203 |
| chr_1 | g9162 | g9162.t5 | cds | g9162.t5.CDS2 | 552851 | 553203 |
| chr_1 | g9162 | g9162.t5 | exon | g9162.t5.exon3 | 555680 | 556111 |
| chr_1 | g9162 | g9162.t5 | cds | g9162.t5.CDS3 | 555680 | 555700 |
| chr_1 | g9162 | g9162.t5 | TSS | g9162.t5 | 556111 | 556111 |
Sequences
>g9162.t5 Gene=g9162 Length=936
AGACCTGCTTCGTATTTCAAATTGTAAACTCGCATTTTTATTTTTGTCTTAGAGTAATTC
GCGAAATTATCATTTTTTTGAAAATTTAATAAAAAAGTGACAATTAAAATTTATTTATTT
GACATCTCACGTTGTTATCAAATGAGTGTCATTGAATTCTTAAAGTGTGTGATTTTTATT
ATTTGCATTAAATATTGAAATAGTAGATGAGATAAATACTTGCATATGTCCATTATAATC
AACTTTTTAAGTGCAGAAAAATGTTCATCTAGAAATACAAATATAAATTTTTTTTATACA
TTTTAACCGTGAATTATAGTGAGAAATAAAAAGTGTTCGATACGCTTGACGTGGAAGCAA
GGTTAAAAAAATAAAATTAAGAAAAATTTTCCAAAAAAAAGTGAAAATAAAATGAAAAAT
GTTAATGGACAGAGTGATGATGTTGAGAAAGGTTTGAAACAACAATACATACAAAACTCA
ACTTATAACAACAATGAGAATGAAGCAAAGACAGCAAGTACAAACGAGTTGTTGAATGTT
GAATCCAATAGTCCAAGCAACAGTAAGAGCAACAGCAGCAGTAATAATTCAGTTAACTTT
CAACTTGCTCTGAGGATAGTTGGCTCGCTTGCTGTTATAATATTGGCCTCAATATTAATT
TATTTCATGGATAATTTTATTTACTGGATTATTACAATATGTGTTGCATTAGTAACATTA
TTGTTTATTACTGGAATATATCGATGGCTTTATATTGCACTTATCACTGGACCTCGCGAT
TTAATTGCTGTGACGAGATTTATTCGATTACTACTGTTCATTAGAAAACTCGGTAATAAA
AACATTTCTGCTGCTGAGTTGTTTGAACAACAAGTCGAAAAATATCCCAATAAAGCTTGT
TTAGTGTTTGAAGATCGAAGCTGGAGTTTCAAAGAG
>g9162.t5 Gene=g9162 Length=175
MKNVNGQSDDVEKGLKQQYIQNSTYNNNENEAKTASTNELLNVESNSPSNSKSNSSSNNS
VNFQLALRIVGSLAVIILASILIYFMDNFIYWIITICVALVTLLFITGIYRWLYIALITG
PRDLIAVTRFIRLLLFIRKLGNKNISAAELFEQQVEKYPNKACLVFEDRSWSFKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g9162.t5 | PANTHER | PTHR43107:SF21 | FATTY ACID (LONG CHAIN) TRANSPORT PROTEIN, ISOFORM F-RELATED | 51 | 175 | 9.3E-25 |
| 2 | g9162.t5 | PANTHER | PTHR43107 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN | 51 | 175 | 9.3E-25 |
| 6 | g9162.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 64 | - |
| 8 | g9162.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 85 | - |
| 7 | g9162.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 86 | 90 | - |
| 9 | g9162.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 91 | 113 | - |
| 5 | g9162.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 114 | 175 | - |
| 4 | g9162.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 64 | 86 | - |
| 3 | g9162.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 90 | 112 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
