General information for g9168.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Pickpocket protein 11.
Parent gene
- The parent gene g9168 is located on chr_1: 597043..597946 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9168 | g9168.t1 | isoform | g9168.t1 | 597043 | 597946 |
| chr_1 | g9168 | g9168.t1 | exon | g9168.t1.exon1 | 597043 | 597262 |
| chr_1 | g9168 | g9168.t1 | cds | g9168.t1.CDS1 | 597043 | 597262 |
| chr_1 | g9168 | g9168.t1 | exon | g9168.t1.exon2 | 597312 | 597946 |
| chr_1 | g9168 | g9168.t1 | cds | g9168.t1.CDS2 | 597312 | 597946 |
| chr_1 | g9168 | g9168.t1 | TSS | g9168.t1 | NA | NA |
| chr_1 | g9168 | g9168.t1 | TTS | g9168.t1 | NA | NA |
Sequences
>g9168.t1 Gene=g9168 Length=855
ATGATTGAATCATCAAAATTATTAAAATCGAATATTTCTGATGATTTAAAATATTTTTAT
AATAAAAATGGAACCACATACCCATGGAAAACATCAGCTGGTGGTGAAAAAGAATTTTTA
TTGACATTCCTTAATATTGGAGTTTCATTTGAATGTATTAAGCCATCAATTGCAATTCAT
TCACCTTATGAATTTCCAAATTCTCATGATTTTCTTGGAGTTGAAGATAAACATGAATAT
GAAATTAAAATTGTACCAATAATTACAAAAACTGATGAAAGTTTAAGACAAATGAGTTTT
GAAACTCGAAAATGTTATTTTAATGATGAAAAAGAATTGAAGTTTTTCAAAATTTATACA
AAAAACAATTGTGAATTTGAATGTTTATCACATGCATTATATCAAATTTGTAAATGTGTT
CCATTTTATTACATTAGAAATTCAACATGGGATATTTGTAATTTTTATAAAATGAAAAAC
TGCATTGATAATTTACTTCATATGCAATCAACTGAAGGCAACAATTGTAATTGTTTACCT
GCATGCAATTCTGTGTCATACATGTATGAAATTATTCAAAATAAATTTACCGATGATTTT
AGGAAGAATTTTACTAATGTTTGGGGTAAAAGATCTTTAAGACAAGTCAAAAATTTGACA
TTGCGGTCATATTACAAAGATACTGAATATTATGCATTACTGAGACATCAGGAATTCAAA
CTGGTCGATTTTCTGTCATATGTTGGTGGGATTTTAGGACTTTTTGCTGGCATTTCATCT
TTGTCTATATTTGAAGTTATTTATTTTATTACTTTAAGATTATTTACTGATTTATGGCGA
CATTTTCGTTCTTAA
>g9168.t1 Gene=g9168 Length=284
MIESSKLLKSNISDDLKYFYNKNGTTYPWKTSAGGEKEFLLTFLNIGVSFECIKPSIAIH
SPYEFPNSHDFLGVEDKHEYEIKIVPIITKTDESLRQMSFETRKCYFNDEKELKFFKIYT
KNNCEFECLSHALYQICKCVPFYYIRNSTWDICNFYKMKNCIDNLLHMQSTEGNNCNCLP
ACNSVSYMYEIIQNKFTDDFRKNFTNVWGKRSLRQVKNLTLRSYYKDTEYYALLRHQEFK
LVDFLSYVGGILGLFAGISSLSIFEVIYFITLRLFTDLWRHFRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9168.t1 | Gene3D | G3DSA:2.60.470.10 | - | 57 | 237 | 1.7E-33 |
| 6 | g9168.t1 | Gene3D | G3DSA:1.10.287.820 | - | 97 | 182 | 1.7E-33 |
| 7 | g9168.t1 | Gene3D | G3DSA:1.10.287.770 | - | 238 | 267 | 1.7E-33 |
| 2 | g9168.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 58 | 274 | 2.0E-35 |
| 3 | g9168.t1 | PANTHER | PTHR11690:SF243 | PICKPOCKET 12-RELATED | 58 | 274 | 2.0E-35 |
| 1 | g9168.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 56 | 269 | 2.3E-41 |
| 8 | g9168.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 243 | - |
| 10 | g9168.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 244 | 270 | - |
| 9 | g9168.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 271 | 284 | - |
| 4 | g9168.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 248 | 270 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed