General information for g9169.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g9169 is located on chr_1: 598064..600658 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9169 | g9169.t1 | isoform | g9169.t1 | 598064 | 600658 |
| chr_1 | g9169 | g9169.t1 | exon | g9169.t1.exon1 | 598064 | 598279 |
| chr_1 | g9169 | g9169.t1 | cds | g9169.t1.CDS1 | 598064 | 598279 |
| chr_1 | g9169 | g9169.t1 | exon | g9169.t1.exon2 | 598334 | 598463 |
| chr_1 | g9169 | g9169.t1 | cds | g9169.t1.CDS2 | 598334 | 598463 |
| chr_1 | g9169 | g9169.t1 | exon | g9169.t1.exon3 | 598858 | 599208 |
| chr_1 | g9169 | g9169.t1 | cds | g9169.t1.CDS3 | 598858 | 599208 |
| chr_1 | g9169 | g9169.t1 | exon | g9169.t1.exon4 | 599264 | 599560 |
| chr_1 | g9169 | g9169.t1 | cds | g9169.t1.CDS4 | 599264 | 599560 |
| chr_1 | g9169 | g9169.t1 | exon | g9169.t1.exon5 | 599613 | 600658 |
| chr_1 | g9169 | g9169.t1 | cds | g9169.t1.CDS5 | 599613 | 600658 |
| chr_1 | g9169 | g9169.t1 | TSS | g9169.t1 | NA | NA |
| chr_1 | g9169 | g9169.t1 | TTS | g9169.t1 | NA | NA |
Sequences
>g9169.t1 Gene=g9169 Length=2040
ATGGCACAAAAGAAAATTTTAAAAATTCTTCAAAATTATTGTCAAAATACAAATCTTCAT
GGATTTATTTACATTGTTCAACCATCAAGACATAAAATTGAAAGATTTTTTTGGTCAATT
TTGATTTTTACATCATTTATTTTAACTTTAATTTCAATCTACAAACTTTACATTGCAAGT
CAAAAAAATCCAATTATTTTCTACACAGATCAAAATGTTGTTCATGTTCAAGATTTAAAT
TTTCCATCGGTTTCAATTTGCCCTGGAATAATTTATAGAACTTCAATTCGAATTGTATTG
GATTATGATCTCATAGCTTTACATATTTCAGAGAAAACTTTTAATATCGATAATTTACCT
GATGAAATATTAAAAATGTTTCATGTTACAAGTTTAATAAATCGTGATGTATTATTTCAA
AGTCAATACAAAAAGTTTGCATTTTCGACAACTGATTTTATGGACATTCTTCATAGTTTT
GAACTTCCATGGTTTTCATCTTTTAGTAGAATTAAAAACACAACCGTTAACTTTTTTGAT
GCAATTTGGTTAAAGAATTATTATGCAGTTTTAACACAAACACTTTGGAAAGGAGGATTT
TGCTACACTTTTAACTTTCCTAAATTGGAAGATTTTTTTTATGTAGACAAAATTGTTAAA
GATTTTTATTTTCAAGAATTTGCACCGAGTGAGGATTTTGGAAAATTTTCAAAAATGAAT
TTACCTTTGCCATTAAAATCGCCATTACCTGGAAATGGTTATGAAATCAGATATAATGAA
ATAGTTTTTGCTCCAACTGATCAAATATTTATTTCTCAAATAAATAATCTTACTTTAAGC
AATAGACATATTTATTTTAATTTATTCAACTTTTCTATTCCAAAAACATCTTTTGGAGGT
TTCAATTTGATTTTTCATGACAGCTATGAAATAATTCCATGGAATGATAAAATTTTTCAT
TCAAATCCAGATACAACAATCAAATTACTTGTAACACCAAGCATAAAAAGAATCGATGAG
TCATTAAAAATTAGAAATGTTGATGAACGACGTTGTTATTTACCAAATGAGCGAAAACTA
AATTTTCTTAAAGTTTACAACAAAGTTAATTGCGAGCATGAATGTTTGACTTCAATGACA
CTAAATTTATGTAGATGTGTACAATTTTTCATGGTTAGAGGTAAAAGTACAAGAATATGC
GGATTTAAAGATGAAAAATGTTATTTGGAAATTGAAAGCAAATTTCTAACAAATAAACAC
ATTTGTAAATGTTATGAAAATTGTGAAGTTGTTAAATATGATGTGAAAGTAACATTTACA
CAAAAGAATAAACATAAGCAATTTGATATTCATAGGCAAATAGATTCAAAAATCATAATT
GAAATGTCAACACAAGTTGCTGTTGTTGTTAGTGAACGTCAATCAACAACTATCATCGAT
TTTTTATCACTTTCAGGAGGAGTTTTTGGTCTTTTTGCTGGATTTTCAGTTTTATCAGCT
GCTGAAATTGTTTATTATTTTTTAATATCACCAATCAGTGAATATCGAACCGAAAATTCA
ACAAAAGTTCATGCATTACAAGAAGAAATTAAAATTGAAAATAAAATCGTCAAATATTTT
AGTCAAATACTTCAATATTCATCGATCCATAGCTTCAATCATATTGCAAATGAACAGAAA
GGATTTATTGAAAGATTAATTTGGTTGATTTTATTTGTTGGTTCAATGATTTGTACATAT
TTTATGGTGATACAAGTTTTCGGAATGATTGATACTAATATTGTAGCAATCTCAATGGAA
GGAAGAGCAACTAATTTTGAAGAAATACCATTTCCAGCAATAACAGTTCAAGGAAGTTTA
AATAATGCTCTTCAATATATAACATTAGATCTTGATAAACTTTACAAATATATAAATATT
ACAAATAAATTACAAAGTGATTATTTAAAAGAATTTGATCTTGGTGGTGCCACTCATGTA
GATGATTTACAAAATGAAAATTATAAATTTAAATTATTTTCAGAAGGTTATAAAATATGA
>g9169.t1 Gene=g9169 Length=679
MAQKKILKILQNYCQNTNLHGFIYIVQPSRHKIERFFWSILIFTSFILTLISIYKLYIAS
QKNPIIFYTDQNVVHVQDLNFPSVSICPGIIYRTSIRIVLDYDLIALHISEKTFNIDNLP
DEILKMFHVTSLINRDVLFQSQYKKFAFSTTDFMDILHSFELPWFSSFSRIKNTTVNFFD
AIWLKNYYAVLTQTLWKGGFCYTFNFPKLEDFFYVDKIVKDFYFQEFAPSEDFGKFSKMN
LPLPLKSPLPGNGYEIRYNEIVFAPTDQIFISQINNLTLSNRHIYFNLFNFSIPKTSFGG
FNLIFHDSYEIIPWNDKIFHSNPDTTIKLLVTPSIKRIDESLKIRNVDERRCYLPNERKL
NFLKVYNKVNCEHECLTSMTLNLCRCVQFFMVRGKSTRICGFKDEKCYLEIESKFLTNKH
ICKCYENCEVVKYDVKVTFTQKNKHKQFDIHRQIDSKIIIEMSTQVAVVVSERQSTTIID
FLSLSGGVFGLFAGFSVLSAAEIVYYFLISPISEYRTENSTKVHALQEEIKIENKIVKYF
SQILQYSSIHSFNHIANEQKGFIERLIWLILFVGSMICTYFMVIQVFGMIDTNIVAISME
GRATNFEEIPFPAITVQGSLNNALQYITLDLDKLYKYINITNKLQSDYLKEFDLGGATHV
DDLQNENYKFKLFSEGYKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g9169.t1 | Gene3D | G3DSA:1.10.287.770 | - | 35 | 64 | 1.7E-5 |
| 11 | g9169.t1 | Gene3D | G3DSA:2.60.470.10 | - | 65 | 207 | 1.7E-5 |
| 12 | g9169.t1 | Gene3D | G3DSA:1.10.3590.10 | - | 90 | 160 | 1.7E-5 |
| 10 | g9169.t1 | Gene3D | G3DSA:2.60.470.10 | - | 301 | 474 | 9.6E-23 |
| 13 | g9169.t1 | Gene3D | G3DSA:1.10.287.820 | - | 343 | 428 | 9.6E-23 |
| 14 | g9169.t1 | Gene3D | G3DSA:1.10.287.770 | - | 475 | 504 | 9.6E-23 |
| 3 | g9169.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 6 | 532 | 2.2E-56 |
| 5 | g9169.t1 | PANTHER | PTHR11690:SF237 | NACH, ISOFORM E-RELATED | 6 | 532 | 2.2E-56 |
| 4 | g9169.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 536 | 616 | 2.2E-56 |
| 6 | g9169.t1 | PANTHER | PTHR11690:SF237 | NACH, ISOFORM E-RELATED | 536 | 616 | 2.2E-56 |
| 1 | g9169.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 13 | 506 | 5.7E-55 |
| 2 | g9169.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 545 | 616 | 5.3E-12 |
| 17 | g9169.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 35 | - |
| 22 | g9169.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 36 | 57 | - |
| 19 | g9169.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 58 | 480 | - |
| 21 | g9169.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 481 | 508 | - |
| 16 | g9169.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 509 | 565 | - |
| 20 | g9169.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 566 | 590 | - |
| 18 | g9169.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 591 | 679 | - |
| 9 | g9169.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 36 | 58 | - |
| 7 | g9169.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 487 | 509 | - |
| 8 | g9169.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 566 | 588 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed