Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g917 g917.t1 TSS g917.t1 6844344 6844344
chr_3 g917 g917.t1 isoform g917.t1 6844507 6845676
chr_3 g917 g917.t1 exon g917.t1.exon1 6844507 6845676
chr_3 g917 g917.t1 cds g917.t1.CDS1 6844507 6845676
chr_3 g917 g917.t1 TTS g917.t1 6845907 6845907

Sequences

>g917.t1 Gene=g917 Length=1170
ATGTCTCATAATATTCAGTGTGAATTTGAAGTCTTGAATTGGAAGCTTTCTTATTTTACT
TATACTTGTTGTATACAAAATAAGATAATTGATGAGAATGAAAAAATCGAAAGAATTTAT
GGCGTTCATTTAAACAAAAAAACTTATCAAGATGTTATTTTAGTGTATTTCAATGATTGT
AAAATATCAAAAGTTCCACAAGGCTTAACAACTATCTTTCCAAATATGCAAGGAATTGTA
ATTAATAATTCTAATTTAACTTATATTGAACGTGAGGACTTAAAAGAGTACAACAAATTA
AAGATGCTTTACATAGAAAATAACAAAATACAAATTTTTTCGGAAAATCTTTTAGTTGAT
ATGAAATTATTGGAGTTATTTTCAATGCGTGGAAACAAGATTTCATATATTGAGCCAGAT
TTTTTAGATGGTTTAGATAAATTGAAATACGCTAATTTCAAAGACTGTGGTTATATAAAT
TTGGTTTATGACTCAATCGATCCTCATATGAGTGATGTAAGTTTACAAGAATTAAAGAAA
TTGCTTTCAAAAAAGTTCCAACAATCATTATGGAAAAGATTTTCTGAAAGACAAAGAGCT
AAAACAGAACTTTTCAATCATTTGAAAGAAGCAATAGATAAAAATAACCTCAAAGATTTT
AAATTGATTGTTGATAAAGAAGTGTTTAAAATTCATAAACTTGTATTGGCAGCTCGCAGT
CCAGTTTTTGCTGAAATGATTGAAAATAATCCTGATGCAGAAAGCTTGAACCTTGTTGAC
ATTTCTCCTGCAACATTCCGAGAAATTTACAATTTTATGTACACAAATGAATTTCGAAAA
TCTGAAGAAGTAAATTTAGTTAATCTATTAATTGCAAGTGAAAAATTAAAAATCAAAAGA
TTGGCAAATTTTGCAGCAAACGCACTTTTGTACCAAATTACACATGAGAATGCATTTGAC
TTGATGGTATTAGGCACAAAATATGGATATGAAGATTTAAAGAAAATGTCCTTTGAAAAA
ATTAAAGAGATATTCGATGGTGAGGAGATTGATGAAGGATTAGTTGACAATCCAGAAAAA
TTAAAGAAATTGATTTATTTAAAAAATGAAGAAATTCGGTATATAAATGATCTAAAGCAA
AAATTTAAAAACATCATGAACGAAAATTAA

>g917.t1 Gene=g917 Length=389
MSHNIQCEFEVLNWKLSYFTYTCCIQNKIIDENEKIERIYGVHLNKKTYQDVILVYFNDC
KISKVPQGLTTIFPNMQGIVINNSNLTYIEREDLKEYNKLKMLYIENNKIQIFSENLLVD
MKLLELFSMRGNKISYIEPDFLDGLDKLKYANFKDCGYINLVYDSIDPHMSDVSLQELKK
LLSKKFQQSLWKRFSERQRAKTELFNHLKEAIDKNNLKDFKLIVDKEVFKIHKLVLAARS
PVFAEMIENNPDAESLNLVDISPATFREIYNFMYTNEFRKSEEVNLVNLLIASEKLKIKR
LANFAANALLYQITHENAFDLMVLGTKYGYEDLKKMSFEKIKEIFDGEEIDEGLVDNPEK
LKKLIYLKNEEIRYINDLKQKFKNIMNEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g917.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 219 296 0.000e+00
8 g917.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 46 203 0.000e+00
9 g917.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 204 347 0.000e+00
3 g917.t1 PANTHER PTHR24413:SF213 FI01029P-RELATED 192 355 0.000e+00
4 g917.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 192 355 0.000e+00
1 g917.t1 Pfam PF13855 Leucine rich repeat 74 134 3.000e-07
2 g917.t1 Pfam PF00651 BTB/POZ domain 210 309 0.000e+00
10 g917.t1 ProSiteProfiles PS50097 BTB domain profile. 218 282 1.719e+01
7 g917.t1 SMART SM00225 BTB_4 218 313 0.000e+00
5 g917.t1 SUPERFAMILY SSF52058 L domain-like 52 156 0.000e+00
6 g917.t1 SUPERFAMILY SSF54695 POZ domain 201 310 0.000e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values