Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g918 g918.t1 isoform g918.t1 6845964 6847193
chr_3 g918 g918.t1 exon g918.t1.exon1 6845964 6845967
chr_3 g918 g918.t1 cds g918.t1.CDS1 6845964 6845967
chr_3 g918 g918.t1 exon g918.t1.exon2 6846040 6847193
chr_3 g918 g918.t1 cds g918.t1.CDS2 6846040 6847193
chr_3 g918 g918.t1 TTS g918.t1 6847243 6847243
chr_3 g918 g918.t1 TSS g918.t1 NA NA

Sequences

>g918.t1 Gene=g918 Length=1158
ATGTATAAACAAAATCAAATGAAGCAAAAAATTGAATGCAGTTATTCTATTTCAAATTGG
TGTCTACGAACTCCAAAGTATTGCTGTGAAATAAGAAATAAAATAATTAACAGTTACTTA
GAACTTGAATTTATTGGTGATCATTTTCCAAATAGATCAAATAGTGATGTCGATGCAATA
ACTTTTCAAGGATGTTATGTCGATCGACTTCCACAAGGAATTATTAAAATTTTTCCAAAT
CTAAAATATTTTGAATTTTCAAGATCAAATTTAAATTACATTGATCGTGAAGATTTAAAA
GAGTTTGAAAATGTGACAGATTTGTATTTACAAAAGAACAAAATTGTATATTTACCAAAT
GATTTATTTGCTGATTTATCAAATTTAGAAGTAATTTGGCTTCATGACAATAATTTTCAA
CTGATTGAACCGAATGTTTTCAATAATTTAAATAATCTCATAAATTTGCAACTTCCTGAG
TCTTATGTATTCAACACATATAAAGCAAGTCCAAGAGACACGACATTGATTGACATCAAG
AATGAACTTCGTGCAAAATATGAAGTGTCACCGTGGAAGCATGTTTTTCAAGCAAGAAGG
AAAAATGATTTGTACAATGATTTACAGCAAGTGATGAAGAGTGAAGGCTTGAAAGATTTT
ACAATAAGAATTGAAGAGGAAGAGTTCAAAGCACATAAATTTGTACTTGCAGCTCGTAGT
CAAGTATTTGCTGAATTGTTTGAAAATAATAAAGATCTTGAAAGTTTTAATTTGATTGAT
ATTAAACCTAAAATTTTTCGCATAATTTTTAATTTTATTTATACAAATCAACTTTTTGAA
ATGGAGGATGAAATTTTATTTCAAGTAGTTTTAATAAGCAAGAAATTAAAAATAGATAAA
TTGACAAAAAATTGCATTGAAAGACTGATATTAAAAGTTAATGCAAATAATGCATTTAAA
ATGTTAGAATTTAGCAACAAATATAAATTTAAAGACTTGAAGCAAAAATCTTTTGAAGAA
ATTAAAAAAATATTAGGAACGCAGAGAATTGATGAAAGTTTTGCAAACCAACCAGAAAAG
TTGAAAAAATTATTAGAAATGAAAATAAAAATGGATGAAATTGAAATTGAATTTAATGCA
CTTTTGTTGGAAAATTGA

>g918.t1 Gene=g918 Length=385
MYKQNQMKQKIECSYSISNWCLRTPKYCCEIRNKIINSYLELEFIGDHFPNRSNSDVDAI
TFQGCYVDRLPQGIIKIFPNLKYFEFSRSNLNYIDREDLKEFENVTDLYLQKNKIVYLPN
DLFADLSNLEVIWLHDNNFQLIEPNVFNNLNNLINLQLPESYVFNTYKASPRDTTLIDIK
NELRAKYEVSPWKHVFQARRKNDLYNDLQQVMKSEGLKDFTIRIEEEEFKAHKFVLAARS
QVFAELFENNKDLESFNLIDIKPKIFRIIFNFIYTNQLFEMEDEILFQVVLISKKLKIDK
LTKNCIERLILKVNANNAFKMLEFSNKYKFKDLKQKSFEEIKKILGTQRIDESFANQPEK
LKKLLEMKIKMDEIEIEFNALLLEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g918.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 219 296 0.000
10 g918.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 9 172 0.000
11 g918.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 192 343 0.000
3 g918.t1 PANTHER PTHR26379:SF309 OS02G0311150 PROTEIN 197 341 0.000
4 g918.t1 PANTHER PTHR26379 BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 197 341 0.000
1 g918.t1 Pfam PF13855 Leucine rich repeat 104 158 0.000
2 g918.t1 Pfam PF00651 BTB/POZ domain 208 309 0.000
12 g918.t1 ProSiteProfiles PS50097 BTB domain profile. 218 282 17.086
8 g918.t1 SMART SM00369 LRR_typ_2 102 125 7.600
7 g918.t1 SMART SM00369 LRR_typ_2 126 149 0.150
9 g918.t1 SMART SM00225 BTB_4 218 313 0.000
5 g918.t1 SUPERFAMILY SSF52058 L domain-like 55 160 0.000
6 g918.t1 SUPERFAMILY SSF54695 POZ domain 199 310 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values