Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g918 g918.t2 isoform g918.t2 6845964 6847193
chr_3 g918 g918.t2 exon g918.t2.exon1 6845964 6845971
chr_3 g918 g918.t2 exon g918.t2.exon2 6846040 6847193
chr_3 g918 g918.t2 cds g918.t2.CDS1 6846054 6847193
chr_3 g918 g918.t2 TTS g918.t2 6847243 6847243
chr_3 g918 g918.t2 TSS g918.t2 NA NA

Sequences

>g918.t2 Gene=g918 Length=1162
ATGTGTAAATAAACAAAATCAAATGAAGCAAAAAATTGAATGCAGTTATTCTATTTCAAA
TTGGTGTCTACGAACTCCAAAGTATTGCTGTGAAATAAGAAATAAAATAATTAACAGTTA
CTTAGAACTTGAATTTATTGGTGATCATTTTCCAAATAGATCAAATAGTGATGTCGATGC
AATAACTTTTCAAGGATGTTATGTCGATCGACTTCCACAAGGAATTATTAAAATTTTTCC
AAATCTAAAATATTTTGAATTTTCAAGATCAAATTTAAATTACATTGATCGTGAAGATTT
AAAAGAGTTTGAAAATGTGACAGATTTGTATTTACAAAAGAACAAAATTGTATATTTACC
AAATGATTTATTTGCTGATTTATCAAATTTAGAAGTAATTTGGCTTCATGACAATAATTT
TCAACTGATTGAACCGAATGTTTTCAATAATTTAAATAATCTCATAAATTTGCAACTTCC
TGAGTCTTATGTATTCAACACATATAAAGCAAGTCCAAGAGACACGACATTGATTGACAT
CAAGAATGAACTTCGTGCAAAATATGAAGTGTCACCGTGGAAGCATGTTTTTCAAGCAAG
AAGGAAAAATGATTTGTACAATGATTTACAGCAAGTGATGAAGAGTGAAGGCTTGAAAGA
TTTTACAATAAGAATTGAAGAGGAAGAGTTCAAAGCACATAAATTTGTACTTGCAGCTCG
TAGTCAAGTATTTGCTGAATTGTTTGAAAATAATAAAGATCTTGAAAGTTTTAATTTGAT
TGATATTAAACCTAAAATTTTTCGCATAATTTTTAATTTTATTTATACAAATCAACTTTT
TGAAATGGAGGATGAAATTTTATTTCAAGTAGTTTTAATAAGCAAGAAATTAAAAATAGA
TAAATTGACAAAAAATTGCATTGAAAGACTGATATTAAAAGTTAATGCAAATAATGCATT
TAAAATGTTAGAATTTAGCAACAAATATAAATTTAAAGACTTGAAGCAAAAATCTTTTGA
AGAAATTAAAAAAATATTAGGAACGCAGAGAATTGATGAAAGTTTTGCAAACCAACCAGA
AAAGTTGAAAAAATTATTAGAAATGAAAATAAAAATGGATGAAATTGAAATTGAATTTAA
TGCACTTTTGTTGGAAAATTGA

>g918.t2 Gene=g918 Length=379
MKQKIECSYSISNWCLRTPKYCCEIRNKIINSYLELEFIGDHFPNRSNSDVDAITFQGCY
VDRLPQGIIKIFPNLKYFEFSRSNLNYIDREDLKEFENVTDLYLQKNKIVYLPNDLFADL
SNLEVIWLHDNNFQLIEPNVFNNLNNLINLQLPESYVFNTYKASPRDTTLIDIKNELRAK
YEVSPWKHVFQARRKNDLYNDLQQVMKSEGLKDFTIRIEEEEFKAHKFVLAARSQVFAEL
FENNKDLESFNLIDIKPKIFRIIFNFIYTNQLFEMEDEILFQVVLISKKLKIDKLTKNCI
ERLILKVNANNAFKMLEFSNKYKFKDLKQKSFEEIKKILGTQRIDESFANQPEKLKKLLE
MKIKMDEIEIEFNALLLEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g918.t2 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 213 290 0.000
10 g918.t2 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 10 166 0.000
11 g918.t2 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 186 337 0.000
3 g918.t2 PANTHER PTHR24413:SF213 FI01029P-RELATED 179 357 0.000
4 g918.t2 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 179 357 0.000
1 g918.t2 Pfam PF13855 Leucine rich repeat 98 152 0.000
2 g918.t2 Pfam PF00651 BTB/POZ domain 202 303 0.000
12 g918.t2 ProSiteProfiles PS50097 BTB domain profile. 212 276 17.086
8 g918.t2 SMART SM00369 LRR_typ_2 96 119 7.600
7 g918.t2 SMART SM00369 LRR_typ_2 120 143 0.150
9 g918.t2 SMART SM00225 BTB_4 212 307 0.000
5 g918.t2 SUPERFAMILY SSF52058 L domain-like 49 154 0.000
6 g918.t2 SUPERFAMILY SSF54695 POZ domain 193 304 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values