General information for g9186.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Choline-phosphate cytidylyltransferase B.
Parent gene
- The parent gene g9186 is located on chr_1: 680537..681647 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9186 | g9186.t6 | TSS | g9186.t6 | 678431 | 678431 |
| chr_1 | g9186 | g9186.t6 | isoform | g9186.t6 | 678569 | 681517 |
| chr_1 | g9186 | g9186.t6 | exon | g9186.t6.exon1 | 678569 | 678676 |
| chr_1 | g9186 | g9186.t6 | exon | g9186.t6.exon2 | 680537 | 680832 |
| chr_1 | g9186 | g9186.t6 | exon | g9186.t6.exon3 | 680891 | 681517 |
| chr_1 | g9186 | g9186.t6 | cds | g9186.t6.CDS1 | 680906 | 681517 |
| chr_1 | g9186 | g9186.t6 | TTS | g9186.t6 | 681754 | 681754 |
Sequences
>g9186.t6 Gene=g9186 Length=1031
ATGGAATCGCGTAAAAGACCACATGAAAAAGAAACAATGTTTGAAATTGTGAAAGATGAC
TCCAAAAATAACATTAAAAGTTCCTATAAATATATAAGCGATAAGCCGACTTTATGCAAG
CCTGCGCCATTTTCAACAGATCCAGAAGCGATTGCAGAGCGAGAAGCATGTGATTATAGT
CACAGAATAACATTAGATATGGCAAGAAATGGAACTGCCAATCGTAAGATTCGTATCTAC
ACTGATGGCATATATGATCTATTTCATCAAGGACATGCACGACAAATGATGCAAGCAAAG
AATATTTTTCCCAATTCTGAAGTTTATCTCATCATTGGAGCATGCAGCGATGAATTGACT
CATTCAATGAAAGGAAGAACAGTAATGACAGATGTTGAACGATAATTACTGATGAGTTCA
TGGAGAAACACAAGATTGACTTTGTGGCTCAAGACTCGACGCCTTACGTCACACAAGATT
GTGACGATCTTTACAAAGAGATAAAAGAAAAGGGGTATTTTGTAGCAACTGAAAGAACTG
AAGGCGTGTCAACTTCAGGATTAATTGCACGTCTAGTTCGCGATTACGACATTTATGTTC
GCAGAAATTTAGCTCGTGGATATTCAGCTAAAGAGCTGAATGTTTCATTTTTGAAGGAGA
AGAAATTCAGATTACAGAACAAACTTGATGAAATTAAAGACAAAGGCAAAAAGGTAAAGG
AAGATGTCATAATGAAATGGGAGGAAAAATCAAATGAACTTATGAGAGCGTTCCTTATGT
TATTTGGTCGAGATAATTGGAGTCAAAAATGGGACAAATCAAAAGATGCTATTAAAGATG
TAATCAGTTTACATCCAAAGAAGAGATCAAATTTCTTTAAATCAATTAAAGAACATGATG
ATGCATCGCCTCCCAAAAAAATTCCTCGCATTAAGCACTATTCAATCACATCCGATGAAG
ACGATGAAGAATTGAGCAATGGAAATAAAGGATTTCCTTCAATTACATTTACACTACCAT
CTTCGATTTAA
>g9186.t6 Gene=g9186 Length=203
MEKHKIDFVAQDSTPYVTQDCDDLYKEIKEKGYFVATERTEGVSTSGLIARLVRDYDIYV
RRNLARGYSAKELNVSFLKEKKFRLQNKLDEIKDKGKKVKEDVIMKWEEKSNELMRAFLM
LFGRDNWSQKWDKSKDAIKDVISLHPKKRSNFFKSIKEHDDASPPKKIPRIKHYSITSDE
DDEELSNGNKGFPSITFTLPSSI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g9186.t6 | Coils | Coil | Coil | 75 | 95 | - |
| 3 | g9186.t6 | Gene3D | G3DSA:3.40.50.620 | HUPs | 1 | 124 | 4.9E-35 |
| 1 | g9186.t6 | PANTHER | PTHR10739:SF20 | CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE B | 1 | 167 | 1.1E-46 |
| 2 | g9186.t6 | PANTHER | PTHR10739 | CYTIDYLYLTRANSFERASE | 1 | 167 | 1.1E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed