Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g919 g919.t5 TTS g919.t5 6862025 6862025
chr_3 g919 g919.t5 isoform g919.t5 6862146 6863474
chr_3 g919 g919.t5 exon g919.t5.exon1 6862146 6862208
chr_3 g919 g919.t5 exon g919.t5.exon2 6862262 6862515
chr_3 g919 g919.t5 exon g919.t5.exon3 6862683 6862985
chr_3 g919 g919.t5 cds g919.t5.CDS1 6862840 6862985
chr_3 g919 g919.t5 exon g919.t5.exon4 6863219 6863359
chr_3 g919 g919.t5 cds g919.t5.CDS2 6863219 6863359
chr_3 g919 g919.t5 exon g919.t5.exon5 6863420 6863474
chr_3 g919 g919.t5 cds g919.t5.CDS3 6863420 6863474
chr_3 g919 g919.t5 TSS g919.t5 6863485 6863485

Sequences

>g919.t5 Gene=g919 Length=816
ATGTTCCTAAGAATTTTGACATTATTTTTGTGCTTTGCAGTTGTTCTTTCAGCTCCTCAA
CAAATTGAAAGGAAAATTTTAGGAGGTGAAGAAAATGCTTTAGGTGAAATTCCTTATGTT
GTTTCAATCACAATTTTTACTGGTTTACATATTTGTTCTGGTGCAATTATCAGTGATTGG
TGGACGATAACGGCAGCACATTGTATTTTTGGTCGAGGACCAAATACAGTTGTTGTTCGA
CCTGGAAGAATTCGTCTTGACGTAAATTCAATGGAAGATCGACAAGGAAGTGTTTTGATA
ACTCATCCAAATTATGTTGCCGAAATTTTAGAAAACGAGTAAGTTGTAATTTTTTATAAG
ATAAAAATTAAATATTTTTTAACATTTAACAGCATAGGATTGATTCAAGTTTCTCGAGCA
TTTGTTTTCAATGTCAATATTCAACCAATCGCTTTGAGTGATAGTTTTGTGGGCGGTGGA
ATTGCTGCTGCTGTATCAGGTTGGGGAACACTCACGCCTGGTGGAATTAATCATAATTTT
CTTCTAACACTTCAAACTTCAACACTATCAAATGCTGATTGTCAATCACGTCATACAAGT
CAAAATGCAGCACTGATAAGAGATGATACAATTTGTACAAATAATCTAGTTGGTGAAGGA
TTTTGTAATCGAGCTTTTGGGTCGCCTTTGGTCAGTGATTCAAAATTAATTGCTATCGCT
TCATGGAATGTTCCTTGTGCTTTGGGCTATCCTGATGTTTATTCGAGAATTTTTACAAGT
CTTGATTGGATAAGAACAGTAACTGGAATAAATTAA

>g919.t5 Gene=g919 Length=113
MFLRILTLFLCFAVVLSAPQQIERKILGGEENALGEIPYVVSITIFTGLHICSGAIISDW
WTITAAHCIFGRGPNTVVVRPGRIRLDVNSMEDRQGSVLITHPNYVAEILENE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g919.t5 Gene3D G3DSA:2.40.10.10 - 26 37 4.1E-17
5 g919.t5 Gene3D G3DSA:2.40.10.10 - 38 111 4.1E-17
2 g919.t5 PANTHER PTHR24250 CHYMOTRYPSIN-RELATED 10 106 4.7E-14
1 g919.t5 Pfam PF00089 Trypsin 26 109 2.3E-12
8 g919.t5 Phobius SIGNAL_PEPTIDE Signal peptide region 1 24 -
9 g919.t5 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
10 g919.t5 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 16 -
11 g919.t5 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 17 24 -
7 g919.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 25 113 -
12 g919.t5 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 63 68 -
13 g919.t5 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 26 113 10.052
3 g919.t5 SUPERFAMILY SSF50494 Trypsin-like serine proteases 1 110 1.47E-22
4 g919.t5 SignalP_EUK SignalP-TM SignalP-TM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed