Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g919 g919.t7 TTS g919.t7 6862025 6862025
chr_3 g919 g919.t7 isoform g919.t7 6862146 6863474
chr_3 g919 g919.t7 exon g919.t7.exon1 6862146 6862208
chr_3 g919 g919.t7 cds g919.t7.CDS1 6862146 6862208
chr_3 g919 g919.t7 exon g919.t7.exon2 6862262 6862515
chr_3 g919 g919.t7 cds g919.t7.CDS2 6862262 6862515
chr_3 g919 g919.t7 exon g919.t7.exon3 6862683 6862789
chr_3 g919 g919.t7 cds g919.t7.CDS3 6862683 6862789
chr_3 g919 g919.t7 exon g919.t7.exon4 6862844 6862985
chr_3 g919 g919.t7 cds g919.t7.CDS4 6862844 6862911
chr_3 g919 g919.t7 exon g919.t7.exon5 6863219 6863474
chr_3 g919 g919.t7 TSS g919.t7 6863485 6863485

Sequences

>g919.t7 Gene=g919 Length=822
ATGTTCCTAAGAATTTTGACATTATTTTTGTGCTTTGCAGTTGTTCTTTCAGCTCGTAAA
TTTTGTATACATTTTTAAATTTTTATTTAAACTTTTAAAGAAATTAAAATTTCAGCTCAA
CAAATTGAAAGGAAAATTTTAGGAGGTGAAGAAAATGCTTTAGGTGAAATTCCTTATGTT
GTTTCAATCACAATTTTTACTGGTTTACATATTTGTTCTGGTGCAATTATCAGTGATTGG
TGGACGATAACGGCAGCACATTGTATTTTTGGTCGAGGACCAAATACAGTTGTTGTTCGA
CCTGGAAGAATTCGTCTTGACGTAAATTCAATGGAAGATCGACAAGGAAGTGTTTTGATA
ACTCATCCAAATTATGTTGCCGAAATTTTAGAAAACGACATAGGATTGATTCAAGTTTCT
CGAGCATTTGTTTTCAATGTCAATATTCAACCAATCGCTTTGAGTGATAGTTTTGTGGGC
GGTGGAATTGCTGCTGCTGTATCAGGTTGGGGAACACTCACGCCTGGTGGAATTAATCAT
AATTTTCTTCTAACACTTCAAACTTCAACACTATCAAATGCTGATTGTCAATCACGTCAT
ACAAGTCAAAATGCAGCACTGATAAGAGATGATACAATTTGTACAAATAATCTAGTTGGT
GAAGGATTTTGTAATCGAGCTTTTGGGTCGCCTTTGGTCAGTGATTCAAAATTAATTGCT
ATCGCTTCATGGAATGTTCCTTGTGCTTTGGGCTATCCTGATGTTTATTCGAGAATTTTT
ACAAGTCTTGATTGGATAAGAACAGTAACTGGAATAAATTAA

>g919.t7 Gene=g919 Length=163
MEDRQGSVLITHPNYVAEILENDIGLIQVSRAFVFNVNIQPIALSDSFVGGGIAAAVSGW
GTLTPGGINHNFLLTLQTSTLSNADCQSRHTSQNAALIRDDTICTNNLVGEGFCNRAFGS
PLVSDSKLIAIASWNVPCALGYPDVYSRIFTSLDWIRTVTGIN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g919.t7 Gene3D G3DSA:2.40.10.10 - 7 157 0.0000000
7 g919.t7 Gene3D G3DSA:2.40.10.10 - 42 150 0.0000000
2 g919.t7 PANTHER PTHR24256:SF503 SERINE PROTEASE H64 8 161 0.0000000
3 g919.t7 PANTHER PTHR24256 TRYPTASE-RELATED 8 161 0.0000000
1 g919.t7 Pfam PF00089 Trypsin 4 156 0.0000000
8 g919.t7 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 161 15.1110000
5 g919.t7 SMART SM00020 trypsin_2 2 156 0.0000007
4 g919.t7 SUPERFAMILY SSF50494 Trypsin-like serine proteases 9 161 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed