Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Trypsin II-P29.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g919 g919.t9 TTS g919.t9 6862025 6862025
chr_3 g919 g919.t9 isoform g919.t9 6862146 6863474
chr_3 g919 g919.t9 exon g919.t9.exon1 6862146 6862208
chr_3 g919 g919.t9 exon g919.t9.exon2 6862262 6862515
chr_3 g919 g919.t9 cds g919.t9.CDS1 6862485 6862515
chr_3 g919 g919.t9 exon g919.t9.exon3 6862679 6862789
chr_3 g919 g919.t9 cds g919.t9.CDS2 6862679 6862789
chr_3 g919 g919.t9 exon g919.t9.exon4 6862844 6862985
chr_3 g919 g919.t9 cds g919.t9.CDS3 6862844 6862985
chr_3 g919 g919.t9 exon g919.t9.exon5 6863219 6863374
chr_3 g919 g919.t9 cds g919.t9.CDS4 6863219 6863374
chr_3 g919 g919.t9 exon g919.t9.exon6 6863420 6863474
chr_3 g919 g919.t9 cds g919.t9.CDS5 6863420 6863474
chr_3 g919 g919.t9 TSS g919.t9 6863485 6863485

Sequences

>g919.t9 Gene=g919 Length=781
ATGTTCCTAAGAATTTTGACATTATTTTTGTGCTTTGCAGTTGTTCTTTCAGCTCAAATT
AAAATTTCAGCTCAACAAATTGAAAGGAAAATTTTAGGAGGTGAAGAAAATGCTTTAGGT
GAAATTCCTTATGTTGTTTCAATCACAATTTTTACTGGTTTACATATTTGTTCTGGTGCA
ATTATCAGTGATTGGTGGACGATAACGGCAGCACATTGTATTTTTGGTCGAGGACCAAAT
ACAGTTGTTGTTCGACCTGGAAGAATTCGTCTTGACGTAAATTCAATGGAAGATCGACAA
GGAAGTGTTTTGATAACTCATCCAAATTATGTTGCCGAAATTTTAGAAAACGACATAGGA
TTGATTCAAGTTTCTCGAGCATTTGTTTTCAATGTCAATATTCAACCAATCGCTTTGAGT
GATAGTTTTGTGGGCGGTGGAATTGCTGCTGCTGTATCAGGTCAGTTGGGGAACACTCAC
GCCTGGTGGAATTAATCATAATTTTCTTCTAACACTTCAAACTTCAACACTATCAAATGC
TGATTGTCAATCACGTCATACAAGTCAAAATGCAGCACTGATAAGAGATGATACAATTTG
TACAAATAATCTAGTTGGTGAAGGATTTTGTAATCGAGCTTTTGGGTCGCCTTTGGTCAG
TGATTCAAAATTAATTGCTATCGCTTCATGGAATGTTCCTTGTGCTTTGGGCTATCCTGA
TGTTTATTCGAGAATTTTTACAAGTCTTGATTGGATAAGAACAGTAACTGGAATAAATTA
A

>g919.t9 Gene=g919 Length=164
MFLRILTLFLCFAVVLSAQIKISAQQIERKILGGEENALGEIPYVVSITIFTGLHICSGA
IISDWWTITAAHCIFGRGPNTVVVRPGRIRLDVNSMEDRQGSVLITHPNYVAEILENDIG
LIQVSRAFVFNVNIQPIALSDSFVGGGIAAAVSGQLGNTHAWWN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g919.t9 Gene3D G3DSA:2.40.10.10 - 23 158 8.7E-25
2 g919.t9 PANTHER PTHR24276 POLYSERASE-RELATED 3 154 4.4E-23
3 g919.t9 PANTHER PTHR24276:SF78 AT20289P-RELATED 3 154 4.4E-23
1 g919.t9 Pfam PF00089 Trypsin 31 141 4.4E-20
8 g919.t9 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
9 g919.t9 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
10 g919.t9 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 12 -
11 g919.t9 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 17 -
7 g919.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 164 -
12 g919.t9 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 68 73 -
14 g919.t9 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 31 154 13.18
13 g919.t9 SMART SM00020 trypsin_2 30 163 0.005
4 g919.t9 SUPERFAMILY SSF50494 Trypsin-like serine proteases 6 154 9.57E-32
5 g919.t9 SignalP_EUK SignalP-TM SignalP-TM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed