General information for g9194.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dehydrodolichyl diphosphate synthase complex subunit DHDDS.
Parent gene
- The parent gene g9194 is located on chr_1: 700604..701626 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9194 | g9194.t1 | isoform | g9194.t1 | 700604 | 701626 |
| chr_1 | g9194 | g9194.t1 | exon | g9194.t1.exon1 | 700604 | 700837 |
| chr_1 | g9194 | g9194.t1 | cds | g9194.t1.CDS1 | 700604 | 700837 |
| chr_1 | g9194 | g9194.t1 | exon | g9194.t1.exon2 | 700894 | 701350 |
| chr_1 | g9194 | g9194.t1 | cds | g9194.t1.CDS2 | 700894 | 701350 |
| chr_1 | g9194 | g9194.t1 | exon | g9194.t1.exon3 | 701430 | 701626 |
| chr_1 | g9194 | g9194.t1 | cds | g9194.t1.CDS3 | 701430 | 701626 |
| chr_1 | g9194 | g9194.t1 | TSS | g9194.t1 | 702357 | 702357 |
| chr_1 | g9194 | g9194.t1 | TTS | g9194.t1 | NA | NA |
Sequences
>g9194.t1 Gene=g9194 Length=888
ATGAGTTGGATAAGAAATGAAGAACTTAAACTGAGTTTTTTCGAAAATTTAGCAATTAAA
ATTATTAAGCAAGGACCTATTCCAAAGCATATAGCATTTATTATGGATGGCAATCGTCGT
TGGGCAACAAATTTTAATTTGAATAAATCAGAAGGACATGAATTTGGTTCCGAAAAGCTC
TCAAAGATTCTAAAATGGTGTCCAAAAATTGGCATTAAAGAAGTTACAGTTTATGCATTT
AGTATTGAAAATTTTAAAAGGTCTCAGGATGAAGTTAATGCCATTATGAAGTTATTTATT
CGGAAATTACTTGAAAAGGAGCAAGAATTGCATGAGAAAGGCATAAAAGTAAAAGTAATA
GGAAATTTAGACATGCTTCCAAATGATGTTCAAAAAGTTGTTGCTGATGCGATGCTTTCA
ACAAAAGACAATAGTAAATTAAATCTGAATATTGCATTTGCATACACATCACGAGAAGAA
ATTACTAATTCGATAAAAACAATTGTCGAAGGTGTTGAGAATAATGAATTGATTTCAGAA
GATTTATATAATGTACTAATTGATGAATGTATGTATACAAATCAATCTTCACCAGTTGAC
TTACTCGTAAGAACATCTGGAGAAATGCGATTTAGCGATTTTCTTTTGTGGCAGATACCA
TCAACAGTGTTTTATTTCACTGAAACTTTATGGCCCGATTTTACTCTATGGCACTTACTT
GCTGCAGTGTTTTACTATCAGAGAAACTACACACAAGCAAAAGCTTTAAAAGAGTATTTT
AACCAAACTCGACCAGCTATCACTAATAATCCACGAGTTGATATATTTTTGGCTAATCTC
GAAGAAAAAAGACACGCAAAGTTAGTTGAAATGAGCCAATTGATGTAA
>g9194.t1 Gene=g9194 Length=295
MSWIRNEELKLSFFENLAIKIIKQGPIPKHIAFIMDGNRRWATNFNLNKSEGHEFGSEKL
SKILKWCPKIGIKEVTVYAFSIENFKRSQDEVNAIMKLFIRKLLEKEQELHEKGIKVKVI
GNLDMLPNDVQKVVADAMLSTKDNSKLNLNIAFAYTSREEITNSIKTIVEGVENNELISE
DLYNVLIDECMYTNQSSPVDLLVRTSGEMRFSDFLLWQIPSTVFYFTETLWPDFTLWHLL
AAVFYYQRNYTQAKALKEYFNQTRPAITNNPRVDIFLANLEEKRHAKLVEMSQLM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9194.t1 | CDD | cd00475 | Cis_IPPS | 30 | 248 | 2.58481E-119 |
| 6 | g9194.t1 | Gene3D | G3DSA:3.40.1180.10 | - | 11 | 253 | 8.3E-95 |
| 4 | g9194.t1 | Hamap | MF_01139 | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. | 27 | 255 | 31.999311 |
| 2 | g9194.t1 | PANTHER | PTHR10291 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER | 9 | 251 | 2.1E-91 |
| 3 | g9194.t1 | PANTHER | PTHR10291:SF0 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT DHDDS | 9 | 251 | 2.1E-91 |
| 1 | g9194.t1 | Pfam | PF01255 | Putative undecaprenyl diphosphate synthase | 34 | 250 | 1.7E-79 |
| 8 | g9194.t1 | ProSitePatterns | PS01066 | Undecaprenyl pyrophosphate synthase family signature. | 200 | 217 | - |
| 5 | g9194.t1 | SUPERFAMILY | SSF64005 | Undecaprenyl diphosphate synthase | 22 | 248 | 1.02E-80 |
| 9 | g9194.t1 | TIGRFAM | TIGR00055 | uppS: di-trans,poly-cis-decaprenylcistransferase | 27 | 248 | 4.8E-80 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | MF |
KEGG
Orthology
- This transcript has been annotated with K11778 (ditrans,polycis-polyprenyl diphosphate synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
