General information for g9195.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dehydrodolichyl diphosphate synthase complex subunit DHDDS.
Parent gene
- The parent gene g9195 is located on chr_1: 702080..703470 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9195 | g9195.t1 | TTS | g9195.t1 | 702006 | 702006 |
| chr_1 | g9195 | g9195.t1 | isoform | g9195.t1 | 702080 | 703470 |
| chr_1 | g9195 | g9195.t1 | exon | g9195.t1.exon1 | 702080 | 702319 |
| chr_1 | g9195 | g9195.t1 | cds | g9195.t1.CDS1 | 702080 | 702319 |
| chr_1 | g9195 | g9195.t1 | exon | g9195.t1.exon2 | 702742 | 703198 |
| chr_1 | g9195 | g9195.t1 | cds | g9195.t1.CDS2 | 702742 | 703198 |
| chr_1 | g9195 | g9195.t1 | exon | g9195.t1.exon3 | 703274 | 703470 |
| chr_1 | g9195 | g9195.t1 | cds | g9195.t1.CDS3 | 703274 | 703470 |
| chr_1 | g9195 | g9195.t1 | TSS | g9195.t1 | NA | NA |
Sequences
>g9195.t1 Gene=g9195 Length=894
ATGAATCAGTATAAGAATAATGAGACAAAATTAAGTTTTTTCGAAAATTTAGCAATTAAA
ATTATTAAGCAAGGACCTATTCCAAAGCATATAGCATTTATTATGGATGGCAATCGTCGT
TGGGCAACAAATTTTAATTTGAATAAATCAGAAGGACATGAATTTGGCTCTGAAAAACTC
TCAAAGATTCTAAAATGGTGTCCAAAAATTGGCATTAAAGAAGTTACAGTTTATGCATTT
AGTATTGAAAATTTTAAAAGGTCTCAGGATGAAGTTAATGCCATTATGAAGTTATTTATT
CGGAAATTACTTGAAAAGGAGCAAGAATTGCATGAGAAAGGCATAAAAGTAAAAGTAATA
GGAAATTTAGACATGCTTCCAAATGATGTTCAAAAAGTTGTTGCTGATGCGATGCTTTCA
ACAAAAGACAATAGTAAATTAAATCTAAATATTGCATTCGCATACTCATCACGAGAAGAA
ATTACTAATTCGATAAAAACAATTGTTGAAGGTGTTGAGAATAATGAATTGATTTTAGAA
GATTTAGATAATGTACTAATTGATGAATGTTTGTATACAAATCAATCTTCACCAGTTGAC
TTACTCGTAAGAACATCTGGAGAAATGCGATTTAGTGATTTTCTTTTGTGGCAGGTACCA
TCAACAGTGTTTTATTTCACTACGTCTTTATGGCCCGATTTTACTCTATGGCACTTACTT
GCTGCAGTGTTTTACTATCAGAGAAACTACACACAAGCAAAAGCTTTAAAAGAGCATTAT
AACCAAACTCGACCAGCTATTACTAATAATCCACGAGTTGATAAATTTTTGGCTAATCTC
GAAGAAAAAAGATGCACGAAGTTAGTTGAGATGAATCGATTGATAAAATCATAA
>g9195.t1 Gene=g9195 Length=297
MNQYKNNETKLSFFENLAIKIIKQGPIPKHIAFIMDGNRRWATNFNLNKSEGHEFGSEKL
SKILKWCPKIGIKEVTVYAFSIENFKRSQDEVNAIMKLFIRKLLEKEQELHEKGIKVKVI
GNLDMLPNDVQKVVADAMLSTKDNSKLNLNIAFAYSSREEITNSIKTIVEGVENNELILE
DLDNVLIDECLYTNQSSPVDLLVRTSGEMRFSDFLLWQVPSTVFYFTTSLWPDFTLWHLL
AAVFYYQRNYTQAKALKEHYNQTRPAITNNPRVDKFLANLEEKRCTKLVEMNRLIKS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g9195.t1 | CDD | cd00475 | Cis_IPPS | 30 | 248 | 9.32886E-120 |
| 6 | g9195.t1 | Gene3D | G3DSA:3.40.1180.10 | - | 10 | 253 | 6.2E-95 |
| 4 | g9195.t1 | Hamap | MF_01139 | Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. | 27 | 255 | 31.95504 |
| 2 | g9195.t1 | PANTHER | PTHR10291 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER | 8 | 251 | 1.6E-91 |
| 3 | g9195.t1 | PANTHER | PTHR10291:SF0 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT DHDDS | 8 | 251 | 1.6E-91 |
| 1 | g9195.t1 | Pfam | PF01255 | Putative undecaprenyl diphosphate synthase | 34 | 250 | 1.3E-78 |
| 8 | g9195.t1 | ProSitePatterns | PS01066 | Undecaprenyl pyrophosphate synthase family signature. | 200 | 217 | - |
| 5 | g9195.t1 | SUPERFAMILY | SSF64005 | Undecaprenyl diphosphate synthase | 22 | 248 | 4.45E-81 |
| 9 | g9195.t1 | TIGRFAM | TIGR00055 | uppS: di-trans,poly-cis-decaprenylcistransferase | 27 | 248 | 1.2E-79 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | MF |
KEGG
Orthology
- This transcript has been annotated with K11778 (ditrans,polycis-polyprenyl diphosphate synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
