General information for g9196.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dehydrodolichyl diphosphate synthase complex subunit DHDDS.
Parent gene
- The parent gene g9196 is located on chr_1: 704743..705941 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9196 | g9196.t3 | TTS | g9196.t3 | 704379 | 704379 |
| chr_1 | g9196 | g9196.t3 | isoform | g9196.t3 | 704381 | 705484 |
| chr_1 | g9196 | g9196.t3 | exon | g9196.t3.exon1 | 704381 | 704668 |
| chr_1 | g9196 | g9196.t3 | exon | g9196.t3.exon2 | 704725 | 705190 |
| chr_1 | g9196 | g9196.t3 | cds | g9196.t3.CDS1 | 704743 | 705102 |
| chr_1 | g9196 | g9196.t3 | exon | g9196.t3.exon3 | 705284 | 705484 |
| chr_1 | g9196 | g9196.t3 | TSS | g9196.t3 | 705618 | 705618 |
Sequences
>g9196.t3 Gene=g9196 Length=955
ATGAGTTGGATAAGAAATGAAGAACTCAAACTGAGTTTTTTCGAAAATTTAGCAATTAAA
ATTATTAAGCAAGGACCTATTCCAAAGCATATAGCATTTATTATGGATGGCAATCGTCGT
TGGGCAACAAAGTTTAATCTGAATAAATCAGAAGGACATAAATTTGGCTTTGAGAAACTC
TCAGAAGCACTTCAATGGTGAGTGTCTGGAAATTGGAATTCAAGAAGTTACAGTTTATGC
ATTTAGTATTGAAAATTTTAAAAGATCTCAAGATGAAATTGATACATTAATGGGATTGGC
AAAAGAAAAATTTGCAAAAGTACTTGAAGAAAAGGACAAATTACATGAAAAAGGTGTAAA
AATAAGAGTTGTAGGAAATTTAGACATGCTTCCAAATGATGTTCAAAAAGTTGTTGCTGA
TGCGATGCTTTTAACAAAAGACAATAGTAAATCAATTTTAAATGTTGCATTTGCATACAC
ATCACGAGATGAAATTACAAATTCGATAAAAACAATTGTCGAAGGTGTTGAGAATAATGA
ACTGATTTCAGAAGATTTAGATAATGTACTAATTGACGAATGTATGTATACAAATCAATC
TTCACCAGTTGACTTACTCGTAAGAACATCTGGAGAAATGCGATTATAAGTGATTTCTTT
TGTGCAGATACAATCAACAGTGTTTTATTTCACTGAAACTTTATGGCCCGATTTTACTCT
ATGGCACTTACTTGCTGCAGTGTTTTACTATCAGAGAAACTACACACAAGCAAAAGCTTT
AAAAGAGCATTTTAACCAAACTCGACCAAGCTGTCACTAATAATCCACGAGTTGATAAAT
TTTTGGCTAATCTCGAAGAAAAAAGACACGCAAAGTTAGTTGAAATGAGCCAATTGATAT
AGTGATAATTTATTGTTTTAATACTTAATAATTCTATTAAAATTGATTATTAATA
>g9196.t3 Gene=g9196 Length=119
MGLAKEKFAKVLEEKDKLHEKGVKIRVVGNLDMLPNDVQKVVADAMLLTKDNSKSILNVA
FAYTSRDEITNSIKTIVEGVENNELISEDLDNVLIDECMYTNQSSPVDLLVRTSGEMRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g9196.t3 | Gene3D | G3DSA:3.40.1180.10 | - | 1 | 119 | 0 |
| 2 | g9196.t3 | PANTHER | PTHR10291 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER | 1 | 119 | 0 |
| 3 | g9196.t3 | PANTHER | PTHR10291:SF0 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT DHDDS | 1 | 119 | 0 |
| 1 | g9196.t3 | Pfam | PF01255 | Putative undecaprenyl diphosphate synthase | 3 | 119 | 0 |
| 4 | g9196.t3 | SUPERFAMILY | SSF64005 | Undecaprenyl diphosphate synthase | 5 | 119 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
