General information for g9196.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dehydrodolichyl diphosphate synthase complex subunit DHDDS.
Parent gene
- The parent gene g9196 is located on chr_1: 704743..705941 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g9196 | g9196.t6 | TTS | g9196.t6 | 704379 | 704379 |
| chr_1 | g9196 | g9196.t6 | isoform | g9196.t6 | 704381 | 705554 |
| chr_1 | g9196 | g9196.t6 | exon | g9196.t6.exon1 | 704381 | 704685 |
| chr_1 | g9196 | g9196.t6 | exon | g9196.t6.exon2 | 704743 | 705190 |
| chr_1 | g9196 | g9196.t6 | cds | g9196.t6.CDS1 | 704743 | 705190 |
| chr_1 | g9196 | g9196.t6 | exon | g9196.t6.exon3 | 705288 | 705554 |
| chr_1 | g9196 | g9196.t6 | cds | g9196.t6.CDS2 | 705288 | 705484 |
| chr_1 | g9196 | g9196.t6 | TSS | g9196.t6 | 705618 | 705618 |
Sequences
>g9196.t6 Gene=g9196 Length=1020
GCATATATTATTCATGTTGTTATAGACGACAACAGATTTTATATAATATTAAAAAGCTTT
AATACGAAAAATGAGTTGGATAAGAAATGAAGAACTCAAACTGAGTTTTTTCGAAAATTT
AGCAATTAAAATTATTAAGCAAGGACCTATTCCAAAGCATATAGCATTTATTATGGATGG
CAATCGTCGTTGGGCAACAAAGTTTAATCTGAATAAATCAGAAGGACATAAATTTGGCTT
TGAGAAACTCTCAGAAGCACTTCAATGGTGTCTGGAAATTGGAATTCAAGAAGTTACAGT
TTATGCATTTAGTATTGAAAATTTTAAAAGATCTCAAGATGAAATTGATACATTAATGGG
ATTGGCAAAAGAAAAATTTGCAAAAGTACTTGAAGAAAAGGACAAATTACATGAAAAAGG
TGTAAAAATAAGAGTTGTAGGAAATTTAGACATGCTTCCAAATGATGTTCAAAAAGTTGT
TGCTGATGCGATGCTTTTAACAAAAGACAATAGTAAATCAATTTTAAATGTTGCATTTGC
ATACACATCACGAGATGAAATTACAAATTCGATAAAAACAATTGTCGAAGGTGTTGAGAA
TAATGAACTGATTTCAGAAGATTTAGATAATGTACTAATTGACGAATGTATGTATACAAA
TCAATCTTCACCAGTTGACTTACTCGTAAGAACATCTGGAGAAATGCGATTATAATTCAA
AATTATTTTTAGATACAATCAACAGTGTTTTATTTCACTGAAACTTTATGGCCCGATTTT
ACTCTATGGCACTTACTTGCTGCAGTGTTTTACTATCAGAGAAACTACACACAAGCAAAA
GCTTTAAAAGAGCATTTTAACCAAACTCGACCAAGCTGTCACTAATAATCCACGAGTTGA
TAAATTTTTGGCTAATCTCGAAGAAAAAAGACACGCAAAGTTAGTTGAAATGAGCCAATT
GATATAGTGATAATTTATTGTTTTAATACTTAATAATTCTATTAAAATTGATTATTAATA
>g9196.t6 Gene=g9196 Length=214
MSWIRNEELKLSFFENLAIKIIKQGPIPKHIAFIMDGNRRWATKFNLNKSEGHKFGFEKL
SEALQWCLEIGIQEVTVYAFSIENFKRSQDEIDTLMGLAKEKFAKVLEEKDKLHEKGVKI
RVVGNLDMLPNDVQKVVADAMLLTKDNSKSILNVAFAYTSRDEITNSIKTIVEGVENNEL
ISEDLDNVLIDECMYTNQSSPVDLLVRTSGEMRL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g9196.t6 | CDD | cd00475 | Cis_IPPS | 30 | 214 | 1.5127E-97 |
| 6 | g9196.t6 | Coils | Coil | Coil | 214 | 214 | - |
| 5 | g9196.t6 | Gene3D | G3DSA:3.40.1180.10 | - | 5 | 214 | 6.6E-79 |
| 2 | g9196.t6 | PANTHER | PTHR10291 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER | 9 | 214 | 1.0E-75 |
| 3 | g9196.t6 | PANTHER | PTHR10291:SF0 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE COMPLEX SUBUNIT DHDDS | 9 | 214 | 1.0E-75 |
| 1 | g9196.t6 | Pfam | PF01255 | Putative undecaprenyl diphosphate synthase | 34 | 214 | 1.1E-60 |
| 4 | g9196.t6 | SUPERFAMILY | SSF64005 | Undecaprenyl diphosphate synthase | 24 | 214 | 4.97E-64 |
| 7 | g9196.t6 | TIGRFAM | TIGR00055 | uppS: di-trans,poly-cis-decaprenylcistransferase | 27 | 214 | 1.8E-64 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | MF |
KEGG
Orthology
- This transcript has been annotated with K11778 (ditrans,polycis-polyprenyl diphosphate synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
