General information for g920.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Chymotrypsin-1.
Parent gene
- The parent gene g920 is located on chr_3: 6863614..6864674 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g920 | g920.t4 | TTS | g920.t4 | 6863536 | 6863536 |
| chr_3 | g920 | g920.t4 | isoform | g920.t4 | 6863614 | 6864674 |
| chr_3 | g920 | g920.t4 | exon | g920.t4.exon1 | 6863614 | 6863667 |
| chr_3 | g920 | g920.t4 | cds | g920.t4.CDS1 | 6863614 | 6863667 |
| chr_3 | g920 | g920.t4 | exon | g920.t4.exon2 | 6863732 | 6864095 |
| chr_3 | g920 | g920.t4 | cds | g920.t4.CDS2 | 6863732 | 6864095 |
| chr_3 | g920 | g920.t4 | exon | g920.t4.exon3 | 6864152 | 6864293 |
| chr_3 | g920 | g920.t4 | cds | g920.t4.CDS3 | 6864152 | 6864216 |
| chr_3 | g920 | g920.t4 | exon | g920.t4.exon4 | 6864366 | 6864443 |
| chr_3 | g920 | g920.t4 | exon | g920.t4.exon5 | 6864576 | 6864674 |
| chr_3 | g920 | g920.t4 | TSS | g920.t4 | 6864696 | 6864696 |
Sequences
>g920.t4 Gene=g920 Length=737
ATGATTCGTCAATTAGTAGTTTTTGCTTTGTTTGTTTCTGTGGCTTTTGCTGCACGTAAG
ACATAGAAAAATTAGAAGAAAAAAGATCTAGAAAAATTTTACCATGGGCTGTTTCACTTA
GAACATTAGCAGGATTTCATTTCTGTACAGGATCAGTGGTCAGCAATTGGTATGTCACTC
ATTGCGTTGCTGGTCGAGCTGCATCAACAATTCATTTAGTCTTGGGAAGAGTTACACTTG
ACGGATTAACTGGAATGAATCGACAAGGTTTTAGAGTTGTTACTCATCCTGATTATAATG
TTAATACAATGCAATTCGATGTGAGTTTAGTTCAAGTCTCAGTAATAATCACGTTCAGCA
CAACAGTTCAATCAATTTTTGTTGGAAACTCATTCATTGGTGAAGGACTTCCTGCAAAAG
TGTCTGGTTGGGGTTCAACAAGTCAAGAGATCGGACCAACTTCAAATAATCTCAGAACAC
TCGATACAACAACAATTTCAAATGAAAGTTGTAGAGCTCGTCATACAGAAGCTAACGCAG
CTCGCATTACATCAAGTAATTTGTGCACAAATAATGGATTTGGTGAAGGATTCTGTCAAA
CAGGAGCTGGTGGATCTCTTGTATGGAATTCACAATTAATTGGTATTGCTTCATGGAATG
TACCTTGTGCTCTTGGCTTCCCTGATGTTTATGTGAGAATCAGTGAAGTTCGAGATTGGA
TTGTTTCTGTGATTTAA
>g920.t4 Gene=g920 Length=160
MNRQGFRVVTHPDYNVNTMQFDVSLVQVSVIITFSTTVQSIFVGNSFIGEGLPAKVSGWG
STSQEIGPTSNNLRTLDTTTISNESCRARHTEANAARITSSNLCTNNGFGEGFCQTGAGG
SLVWNSQLIGIASWNVPCALGFPDVYVRISEVRDWIVSVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g920.t4 | Gene3D | G3DSA:2.40.10.10 | - | 6 | 156 | 8.4E-32 |
| 7 | g920.t4 | Gene3D | G3DSA:2.40.10.10 | - | 41 | 150 | 8.4E-32 |
| 2 | g920.t4 | PANTHER | PTHR24276 | POLYSERASE-RELATED | 8 | 156 | 5.5E-30 |
| 3 | g920.t4 | PANTHER | PTHR24276:SF78 | AT20289P-RELATED | 8 | 156 | 5.5E-30 |
| 1 | g920.t4 | Pfam | PF00089 | Trypsin | 7 | 156 | 7.6E-26 |
| 9 | g920.t4 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 160 | 16.307 |
| 6 | g920.t4 | SMART | SM00020 | trypsin_2 | 1 | 156 | 9.9E-7 |
| 5 | g920.t4 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 6 | 160 | 1.31E-35 |
| 4 | g920.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed