Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g920 g920.t7 TTS g920.t7 6863536 6863536
chr_3 g920 g920.t7 isoform g920.t7 6863614 6864674
chr_3 g920 g920.t7 exon g920.t7.exon1 6863614 6863653
chr_3 g920 g920.t7 exon g920.t7.exon2 6863749 6864084
chr_3 g920 g920.t7 cds g920.t7.CDS1 6864070 6864084
chr_3 g920 g920.t7 exon g920.t7.exon3 6864196 6864293
chr_3 g920 g920.t7 cds g920.t7.CDS2 6864196 6864293
chr_3 g920 g920.t7 exon g920.t7.exon4 6864357 6864443
chr_3 g920 g920.t7 cds g920.t7.CDS3 6864357 6864443
chr_3 g920 g920.t7 exon g920.t7.exon5 6864504 6864557
chr_3 g920 g920.t7 cds g920.t7.CDS4 6864504 6864557
chr_3 g920 g920.t7 exon g920.t7.exon6 6864620 6864674
chr_3 g920 g920.t7 cds g920.t7.CDS5 6864620 6864674
chr_3 g920 g920.t7 TSS g920.t7 6864696 6864696

Sequences

>g920.t7 Gene=g920 Length=670
ATGATTCGTCAATTAGTAGTTTTTGCTTTGTTTGTTTCTGTGGCTTTTGCTGCACCACAA
AATAGAGAAAGAAGAATTGTTGGTGGAGTTGATAACGTCTTAGGGCAAGTACCATGGGCT
GTTTCACTTAGAACATTAGCAGGATTTCATTTCTGTACAGGATCAGTGGTCAGCAATTGG
TATGTCATCACTGCAGCTCATTGCGTTGCTGGTCGAGCTGCATCAACAATTCATTTAGTC
TTGGGAAGAGTTACACTTGACGGATTAACTGGAATGAATCGACAAGGTTTTAGATTCAAG
TCTCAGTAATAATCACGTTCAGCACAACAGTTCAATCAATTTTTGTTGGAAACTCATTCA
TTGGTGAAGGACTTCCTGCAAAAGTGTCTGGTTGGGGTTCAACAAGTCAAGAGATCGGAC
CAACTTCAAATAATCTCAGAACACTCGATACAACAACAATTTCAAATGAAAGTTGTAGAG
CTCGTCATACAGAAGCTAACGCAGCTCGCATTACATCAAGTAATTTGTGCACAAATAATG
GATTTGGTGAAGGATTCTGTCAAACAGGAGCTGGTGGATCTCTTGTATGGAATTCACAAT
TAATTGGTATTGCTTCATGGAATGTACCTTAATCAGTGAAGTTCGAGATTGGATTGTTTC
TGTGATTTAA

>g920.t7 Gene=g920 Length=102
MIRQLVVFALFVSVAFAAPQNRERRIVGGVDNVLGQVPWAVSLRTLAGFHFCTGSVVSNW
YVITAAHCVAGRAASTIHLVLGRVTLDGLTGMNRQGFRFKSQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g920.t7 Gene3D G3DSA:2.40.10.10 - 26 37 2.0E-16
7 g920.t7 Gene3D G3DSA:2.40.10.10 - 38 88 2.0E-16
2 g920.t7 PANTHER PTHR24250 CHYMOTRYPSIN-RELATED 20 87 2.0E-15
3 g920.t7 PANTHER PTHR24250:SF27 ELASTASE 2-LIKE 20 87 2.0E-15
1 g920.t7 Pfam PF00089 Trypsin 26 85 5.4E-12
10 g920.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 17 -
11 g920.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
12 g920.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 12 -
13 g920.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 13 17 -
9 g920.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 18 102 -
15 g920.t7 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 63 68 -
4 g920.t7 SUPERFAMILY SSF50494 Trypsin-like serine proteases 1 95 2.95E-21
6 g920.t7 SignalP_EUK SignalP-TM SignalP-TM 1 17 -
14 g920.t7 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 17 -
5 g920.t7 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 17 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed