Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g920 g920.t9 TTS g920.t9 6863536 6863536
chr_3 g920 g920.t9 isoform g920.t9 6863614 6864674
chr_3 g920 g920.t9 exon g920.t9.exon1 6863614 6863667
chr_3 g920 g920.t9 cds g920.t9.CDS1 6863614 6863667
chr_3 g920 g920.t9 exon g920.t9.exon2 6863732 6864095
chr_3 g920 g920.t9 cds g920.t9.CDS2 6863732 6864095
chr_3 g920 g920.t9 exon g920.t9.exon3 6864152 6864293
chr_3 g920 g920.t9 cds g920.t9.CDS3 6864152 6864216
chr_3 g920 g920.t9 exon g920.t9.exon4 6864357 6864674
chr_3 g920 g920.t9 TSS g920.t9 6864696 6864696

Sequences

>g920.t9 Gene=g920 Length=878
ATGATTCGTCAATTAGTAGTTTTTGCTTTGTTTGTTTCTGTGGCTTTTGCTGCACGTAAG
ACATAGAAAAATTAGAAGAAAAAAGATCTAGAAAAATTTGTTTTTATAAATTTGCAGCAC
AAAATAGAGAAAGAAGAATTGTTGGTGGAGTTGATAACGTCTTAGGGCAAGGTTGATATT
TTTTATAACTATTTATTATAAGTAAAATTAACATTATAATTATATTTTCAGTACCATGGG
CTGTTTCACTTAGAACATTAGCAGGATTTCATTTCTGTACAGGATCAGTGGTCAGCAATT
GGTATGTCATCACTGCAGCTCATTGCGTTGCTGGTCGAGCTGCATCAACAATTCATTTAG
TCTTGGGAAGAGTTACACTTGACGGATTAACTGGAATGAATCGACAAGGTTTTAGAGTTG
TTACTCATCCTGATTATAATGTTAATACAATGCAATTCGATGTGAGTTTAGTTCAAGTCT
CAGTAATAATCACGTTCAGCACAACAGTTCAATCAATTTTTGTTGGAAACTCATTCATTG
GTGAAGGACTTCCTGCAAAAGTGTCTGGTTGGGGTTCAACAAGTCAAGAGATCGGACCAA
CTTCAAATAATCTCAGAACACTCGATACAACAACAATTTCAAATGAAAGTTGTAGAGCTC
GTCATACAGAAGCTAACGCAGCTCGCATTACATCAAGTAATTTGTGCACAAATAATGGAT
TTGGTGAAGGATTCTGTCAAACAGGAGCTGGTGGATCTCTTGTATGGAATTCACAATTAA
TTGGTATTGCTTCATGGAATGTACCTTGTGCTCTTGGCTTCCCTGATGTTTATGTGAGAA
TCAGTGAAGTTCGAGATTGGATTGTTTCTGTGATTTAA

>g920.t9 Gene=g920 Length=160
MNRQGFRVVTHPDYNVNTMQFDVSLVQVSVIITFSTTVQSIFVGNSFIGEGLPAKVSGWG
STSQEIGPTSNNLRTLDTTTISNESCRARHTEANAARITSSNLCTNNGFGEGFCQTGAGG
SLVWNSQLIGIASWNVPCALGFPDVYVRISEVRDWIVSVI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g920.t9 Gene3D G3DSA:2.40.10.10 - 6 156 8.4E-32
7 g920.t9 Gene3D G3DSA:2.40.10.10 - 41 150 8.4E-32
2 g920.t9 PANTHER PTHR24276 POLYSERASE-RELATED 8 156 5.5E-30
3 g920.t9 PANTHER PTHR24276:SF78 AT20289P-RELATED 8 156 5.5E-30
1 g920.t9 Pfam PF00089 Trypsin 7 156 7.6E-26
9 g920.t9 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 160 16.307
6 g920.t9 SMART SM00020 trypsin_2 1 156 9.9E-7
5 g920.t9 SUPERFAMILY SSF50494 Trypsin-like serine proteases 6 160 1.31E-35
4 g920.t9 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 43 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed